Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2305g00001 ATGGGGAAGAAAAAGAATCAGGTAGGAGAAACAAGTGAAGATAGAGGAAATCAGAAGAAAGTTGAAGATATAACCCCCAAATCTTATGACAATGATACCGTGGTGCTTTTATCAATGTCTCAAGAGTTGAAGGATGAGGGGAACAAGCTGTTCCAGAAGCGGGATCCTGAAGGAGCTTTGTTAAGGTATGAGAAGGCCCTCAAATTGCTTCCAAGAAATCATGCAGATGTGTCCTATCTGCGGAGTAACATGGCTGCGTGCTACATGCAGATGGGACTCGGTGAGTATCCTAGGGCAATCCATGAATGCGATCTGGCTCTTGAAGTAACACCAAAATATAGTAAAGCTCTGATGAAGAGGGCGAGGTGCTATGAGGCTTTAAATAGGCTGGATTTTGCACTGAGAGATGTTAGTTCTGTTTTGAAGATAGAGCCAAATAATATCATGGCTGTGGAGGTCTCGGATAAGGTGAAACGTGCACTTGAAAAAAAGGGATTAAGAGTAAATGATACTGAAATTGAGTTGCCTCCAGATTATGTTGAACCTACTCCTGGTTTGCGTCTGAAAAAAATAGTGAAAGAAAAGATACATAAGAAGAAGAGCATCAAAAAAGAGAAGGTGAAGACTCCTGATGAAATTGAAGAAAAGCAAGCTAAGGAGAAATTGGAAGAGAAGAAAGCTGAGGACAGTGTTGAAGTAAAGAAGGCTGAGGACAGTCAGAAAGCGAAGAAGGCTAGCAAATCTAAAAAGAAGAAGGCCAAGGAAAAAATTGACAAGAAGAAGGATGATGATGTTAAGGAGGTTATCGAGGAAAAAAGTAATGGTAAAAGTGATGGTAAAAGTGAAGATATACGTAAGAAGTCAACAAAACTTGTTTTTGGTGACGATATAAGATGGGCTGAATTGCCAGTGAATTGCAGCCTCTTTCAGCTAAGAGAAGTTATTTGTGATCGGTTCCCAAGACTTGGAGCAGTTCTTGTCAAATATAGGGACCAAGAGGATGATCTGGTCACTCTCACTTCTGATGAAGAATTAAGGTGGGCTGAAAAAGGATCACAGGGTTCTATGCGGCTGTACATAGTGGAAGCTAATCCTGATCATGATCCATTCTTTGAGAAACTTAATGTGAAGAATGAAGAAAAGGTTAGCATTTATAATTCTCCTGTTAATGGTTCTGTGGTGAAAGCGAAGGACATTATTAGCTCATCTTGTATTGAGGATTGGATAATTCAGTTTGCACAACTGTTCAGGAACCATGTTGGTGTTGAATCTGATAGATATTTAGATTTTCATGAATTTGGGATGAAGCTCTATTCAGAGACTGTGGAGGAGACAATTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCTGGAGATAAGTTCCAAGAGATGACAGCTCTAGCATTGTTGTATTGGGGAAATGTGCATATGTCCAGAACAAGGAAGAAAGTGTATTTAACAGGAGATTCTTCTAAAGAGCGTCTGCATGAACAAATCAAAAGTTTGTACTATTGGGCGCAGGAAGAATATGCAAAAGTTGGAGAAAAATATGAAGCAGCCATTCAAATTAAGTCGGATTTTTATGAAGGCTTCCTGGCACTAGCGCAGCAGCAGTTTGAGCAAGCAAAAGTTTGTTGGAATTATGCACTCTGTAGTAATGTAGATTTAGAAACATGGGACCCTACTGAGAACATGGGGTTGGATCGGCTATTCAAAAATATGTCAGCAGATGAAATTGCTGCACAG 1749 0.3997 MGKKKNQVGETSEDRGNQKKVEDITPKSYDNDTVVLLSMSQELKDEGNKLFQKRDPEGALLRYEKALKLLPRNHADVSYLRSNMAACYMQMGLGEYPRAIHECDLALEVTPKYSKALMKRARCYEALNRLDFALRDVSSVLKIEPNNIMAVEVSDKVKRALEKKGLRVNDTEIELPPDYVEPTPGLRLKKIVKEKIHKKKSIKKEKVKTPDEIEEKQAKEKLEEKKAEDSVEVKKAEDSQKAKKASKSKKKKAKEKIDKKKDDDVKEVIEEKSNGKSDGKSEDIRKKSTKLVFGDDIRWAELPVNCSLFQLREVICDRFPRLGAVLVKYRDQEDDLVTLTSDEELRWAEKGSQGSMRLYIVEANPDHDPFFEKLNVKNEEKVSIYNSPVNGSVVKAKDIISSSCIEDWIIQFAQLFRNHVGVESDRYLDFHEFGMKLYSETVEETITSEEAQGLFDMAGDKFQEMTALALLYWGNVHMSRTRKKVYLTGDSSKERLHEQIKSLYYWAQEEYAKVGEKYEAAIQIKSDFYEGFLALAQQQFEQAKVCWNYALCSNVDLETWDPTENMGLDRLFKNMSADEIAAQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2305g00001 583 CDD PB1 294 360 - -
Mupr2305g00001 583 MobiDBLite consensus disorder prediction 200 257 - -
Mupr2305g00001 583 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Mupr2305g00001 583 MobiDBLite consensus disorder prediction 1 27 - -
Mupr2305g00001 583 SUPERFAMILY CAD & PB1 domains 285 373 - -
Mupr2305g00001 583 SMART PB1_new 286 363 IPR000270 GO:0005515
Mupr2305g00001 583 Gene3D - 264 363 - -
Mupr2305g00001 583 SUPERFAMILY TPR-like 41 551 IPR011990 GO:0005515
Mupr2305g00001 583 MobiDBLite consensus disorder prediction 205 244 - -
Mupr2305g00001 583 Coils Coil 219 263 - -
Mupr2305g00001 583 PANTHER PROTEIN CLMP1 3 568 IPR044517 -
Mupr2305g00001 583 Pfam PB1 domain 289 361 IPR000270 GO:0005515
Mupr2305g00001 583 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Mupr2305g00001 583 ProSiteProfiles PB1 domain profile. 286 363 IPR000270 GO:0005515
Mupr2305g00001 583 Gene3D Tetratricopeptide repeat domain 38 168 IPR011990 GO:0005515
Mupr2305g00001 583 SMART tpr_5 114 147 IPR019734 GO:0005515
Mupr2305g00001 583 SMART tpr_5 40 73 IPR019734 GO:0005515
Mupr2305g00001 583 SMART tpr_5 78 113 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2305g00001 Mupr-Chr2305 16033 17872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2305g00001 28 147 Calmodulin-binding Proteins AT3G25230 31.008 4.82e-08 53.9