Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2301g00001 ATGGACCTGACCTCCAGTACACACACCTTAGATGCTGATACTAAAACCACACGACCACCTCCAACCCAACCCCCAAAGTCTCTATCTTTCACCAACGGCACACTCAAGCGCCACCCCACCGTTGCTCCGCCGCCACAACCACCGTCCATGGTGGTTTCCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCATAGGCGGACATGCACTTGACGGCTGCGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGACCCTCGCTCCCTCAAATGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGCGACCCTCAAGAACACACCACCACCAACGTCAACAACAACAAAAACCACAACCACAACCACAACCCCACTTTTCTAAGCTGCATCTACACCCCTTCAGCCCCACCACCACTCCCTCACCGAGCCATGAGCCAAAGCACGAGCCCGAGCCTGAGTTCGAGCCCGAGCCACAGTCCGAGCCCGATGTCAAGCCCATCACCTCCGCCGCTCTCGCACGTGCCGCCTTACCACGCCTCGGCTCCCCACATGCTCTTGGCCCTCGGCACTGCCTATTCTGCACCTTCCGATGAACACCACCACCACAAAAGCCTCAACTTTTCAAGCGTGGTGATGAAGGGTGAGAACCCGAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAAAAGGAGAAGATGCAAAGCTTCTCTGAGAAACTAGGGTGGAGAATGCAGAAGGGGGATGATGAGTTGGTCCAGGAATTCTGCAATGACATTGGGGTCTCTAGAGGAGTCTTCAAGGTTTGGATGCACAACAACAAGAACACTTTTAGGAAATTATCAGATCAAGGGGCAAATCCAAATCCAAACCCAAATGAAAATGAAAATGCTACTCAAATTGGGGATCATCATCATGCCAATGCCAATGGTGATAGTGATAATAATAACTGTGATATCAACAACCCCTACAACCCAAATAGCACCAACAATGACATTCACATAAACGAAGAAGATAGCTGTGTCAATGCTCACTCTGAAATTAGTGTCATCACTCATCCAGACATGTTTCATCCTCTTCTTCTGATGGCTCTTATTGCTGTCACTGGTCCTAAGATGAATCAGGCCCACTTGAAAAAGCAACACCACTATACACTCAGCCCAAACAAAATTCTATTACCATGA 1188 0.5109 MDLTSSTHTLDADTKTTRPPPTQPPKSLSFTNGTLKRHPTVAPPPQPPSMVVSYKECLKNHAASIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQEHTTTNVNNNKNHNHNHNPTFLSCIYTPSAPPPLPHRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTAYSAPSDEHHHHKSLNFSSVVMKGENPKKRYRTKFSKEQKEKMQSFSEKLGWRMQKGDDELVQEFCNDIGVSRGVFKVWMHNNKNTFRKLSDQGANPNPNPNENENATQIGDHHHANANGDSDNNNCDINNPYNPNSTNNDIHINEEDSCVNAHSEISVITHPDMFHPLLLMALIAVTGPKMNQAHLKKQHHYTLSPNKILLP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2301g00001 395 Gene3D - 210 280 - -
Mupr2301g00001 395 MobiDBLite consensus disorder prediction 1 17 - -
Mupr2301g00001 395 MobiDBLite consensus disorder prediction 110 132 - -
Mupr2301g00001 395 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Mupr2301g00001 395 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 278 - -
Mupr2301g00001 395 NCBIfam homeobox domain, ZF-HD class 220 277 IPR006455 -
Mupr2301g00001 395 MobiDBLite consensus disorder prediction 163 178 - -
Mupr2301g00001 395 MobiDBLite consensus disorder prediction 280 333 - -
Mupr2301g00001 395 MobiDBLite consensus disorder prediction 102 179 - -
Mupr2301g00001 395 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Mupr2301g00001 395 MobiDBLite consensus disorder prediction 1 48 - -
Mupr2301g00001 395 MobiDBLite consensus disorder prediction 143 162 - -
Mupr2301g00001 395 FunFam Zinc-finger homeodomain protein 2 208 281 - -
Mupr2301g00001 395 Pfam ZF-HD protein dimerisation region 52 106 IPR006456 -
Mupr2301g00001 395 SUPERFAMILY Homeodomain-like 215 281 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2301g00001 Mupr-Chr2301 5770 8546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2301g00001 50 279 ZF-HD Transcription Factor Family AT1G69600 46.444 2.64e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mupr2301g00001 ZF-HD_dimer 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2301g00001 - - vum:124843063 478.404