Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2291g00001 ATCTTATTTTTCTCTCTCCTTAGAACCCTTCTCGGCCTTACCTCACCACACCTCACCACACCTCACCCGAACCCAACCCTCTCTTACCAAAAACCTCTTTCCCTCCGTCAGTTAGGGTTTTGCGGATCTCGATCCGTCTCAATGGACGTTCGCAAGCGAGGAAGACACGAAGCCGCCGTCAACCTTAACGGCGCCGTTAAGAAGAACAAGCAAGAATTGGAGTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTGCATTACGTTCCTGGTGGTTATAATGCGGTTGCCCATATGATGAATTTAAAACCTGCTGCTCCTCCACCAAGAACTGTTGCTGCACCACCACCTGTCCCTAATGGTTCTGCTCCATCTGCTGTTAAAACCCGCATATGCAACAAGTTCAACACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGAGAATGGGAGCTTGGCAAACCCATTGCTCCATCAATTGATGATCATCGTCCTATGGGACCTCCGGCAGCCAGTCGGATGGTTGGTCGAATTGAGCCTCCTCCTGGCTTGGCTGCTAGCTTTGGTGCCATTTCTACCGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCGATTCGGGAACACGAATCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAACTTTTGAACAGATTAAGGAAGCAAGTAACATGGTAAAGGATTTACTTTTGACTGTGTCAATGTCTGCACCACCCAAATCCACCCCAGGTGTTCCTGGCGCCCCTGCCCCCCCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGAGAGATGTCACTTTGCACATGGAGCTACTGAATTGCGCAAGACA 1017 0.4926 ILFFSLLRTLLGLTSPHLTTPHPNPTLSYQKPLSLRQLGFCGSRSVSMDVRKRGRHEAAVNLNGAVKKNKQELESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPPRTVAAPPPVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPMGPPAASRMVGRIEPPPGLAASFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGATELRKT 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2291g00001 339 SUPERFAMILY CCCH zinc finger 82 107 IPR036855 GO:0046872
Mupr2291g00001 339 Gene3D - 140 177 - -
Mupr2291g00001 339 Gene3D - 306 339 - -
Mupr2291g00001 339 Pfam KH domain 217 279 IPR004088 GO:0003723
Mupr2291g00001 339 SUPERFAMILY CCCH zinc finger 307 337 IPR036855 GO:0046872
Mupr2291g00001 339 SMART c3hfinal6 307 333 IPR000571 GO:0046872
Mupr2291g00001 339 SMART c3hfinal6 81 108 IPR000571 GO:0046872
Mupr2291g00001 339 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Mupr2291g00001 339 CDD KH-I_AtC3H36_like 217 282 - -
Mupr2291g00001 339 PANTHER CCCH ZINC FINGER/TIS11-RELATED 67 199 IPR045877 GO:0003729
Mupr2291g00001 339 SMART kh_6 213 283 IPR004087 GO:0003676
Mupr2291g00001 339 Gene3D K Homology domain, type 1 212 305 IPR036612 GO:0003723
Mupr2291g00001 339 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Mupr2291g00001 339 ProSiteProfiles Type-1 KH domain profile. 214 278 - -
Mupr2291g00001 339 ProSiteProfiles Zinc finger C3H1-type profile. 307 334 IPR000571 GO:0046872
Mupr2291g00001 339 FunFam Zinc finger CCCH domain-containing protein 302 338 - -
Mupr2291g00001 339 Pfam RNA-binding, Nab2-type zinc finger 86 106 - -
Mupr2291g00001 339 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 204 284 IPR036612 GO:0003723
Mupr2291g00001 339 FunFam Zinc finger CCCH domain-containing protein 140 177 - -
Mupr2291g00001 339 ProSiteProfiles Zinc finger C3H1-type profile. 81 109 IPR000571 GO:0046872
Mupr2291g00001 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 308 332 IPR000571 GO:0046872
Mupr2291g00001 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 172 IPR000571 GO:0046872
Mupr2291g00001 339 SUPERFAMILY CCCH zinc finger 144 176 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2291g00001 Mupr-Chr2291 2648 7831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2291g00001 82 180 C3H Transcription Factor Family AT1G68200 26.263 1.81e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr2291g00001 KH_1 4.2e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2291g00001 - - pvu:PHAVU_007G259300g 542.732