Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2288g00007 ATGGGTCGAGGGAAGATTGAGATCAAAAGAATCGACAATGCCAGCAGCAGACAAGTCACGTTCTCCAAGCGGAGGACTGGTTTGTTCAAGAAGGCTCAGGAACTTTCCATTCTCTGCGATGCCGAAGTTGCCGTCATAGTTTTCTCCAACACCGGCAAGCTCTTCGAGTTTTCCAGTTCCGGTATGAAGCGAACACTTTCAAGATACAACAAATGCCTTGGTTCTGCAGATGTTGTAGCAGAAAGTAAGGCACAGAAGGAAGATTTTAAGGTGGTGGAGATTCTAAGAGAGGAAATTGCAAAGCTAGAAACAAAGCAATTACAGTTGTTGGGTAAGGATCTGACAGGATTGGGCTTAAAGGAATTGCAAAATTTAGAGCAGCAACTTAATGAAGGGTTATTGTCTGTCAAGGCAAGAAAGGAGGAATTACTCATGGAACAACTGGAGCTATCTAGAGTTCAGGAACAGCGGATTGAGGAGTTTCGTTGTCTGTTTCCACAATCAGAACGTGTGGTCCCATCTTATCTTCAACACCAACATACTGAAAGAAAGAATACTTTTGTAAATACTGGTGCCAGATGTCTCAACTTGGCCAATAACTGTGGAAATGAGAAAGGAGGTTCAGACACAGCATTCCATTTGGGGTACTAT 651 0.4316 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSSSGMKRTLSRYNKCLGSADVVAESKAQKEDFKVVEILREEIAKLETKQLQLLGKDLTGLGLKELQNLEQQLNEGLLSVKARKEELLMEQLELSRVQEQRIEEFRCLFPQSERVVPSYLQHQHTERKNTFVNTGARCLNLANNCGNEKGGSDTAFHLGYY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2288g00007 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr2288g00007 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr2288g00007 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 159 - -
Mupr2288g00007 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr2288g00007 217 Coils Coil 92 112 - -
Mupr2288g00007 217 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mupr2288g00007 217 Pfam K-box region 90 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr2288g00007 217 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mupr2288g00007 217 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Mupr2288g00007 217 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mupr2288g00007 217 Coils Coil 119 142 - -
Mupr2288g00007 217 ProSiteProfiles K-box domain profile. 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr2288g00007 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr2288g00007 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr2288g00007 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr2288g00007 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2288g00007 Mupr-Chr2288 20469 26260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2288g00007 1 215 MADS-box Gene Family AT5G13790 52.193 5.00e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr2288g00007 K-box 2.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2288g00007 - - gmx:547732 336.265