Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2258g00001 ATGAATCGGGCAGGGGGTGGTGATAAGTGTGCATTGCATACAAGAGAGGGCAATGGTTCTGATCAGGTGAGGCCAGGTGCGTCATGTGTGGATGGGATGGGTAGCGATGCAGGTGCTACCTCGTACTCGGCCGCCAAGATTTCGGTCTGGTGGGACATTGCCAACTGTCGTGTTCCCAAAGGCCAAGACGCCAACTCCGTCGCGCAGAACATTACCTCCGCGCTCGCCAACATCAACTACGCCGGCCCCGTCTCCATCTCCGCCTACGGCGACACCAACCGCATCCCCCCGCCCGTCCAGCACGCCCTCTCCAGCACCGGCGTTTCCCTCAACCACGTCCCAACCGGTGCGAAAAATGCGAACGACAAGAAGATTCTAGTAGATATGCTGCTGTGGGCCGTAGACAATCCCGCCCCCGCGAACTATTTGCTCATTTCTAGCGATAGGGACTTCTCCAACGCCCTACACCAACTCAGCATGCGAAAGTACAATATTCTCCTCGCTCAACCGCCGCCACTTTGTCCCTCTCTCGCCAACGCCGCCAAATTCGTCTGGCTCTGGACAACCCTCTCCGCCGGCGGAGCCCCTCTCTTCGTCGCCGACTCCGACCCCTCCTCTAAACCCACCACTCTCGTCAAACCCAAATACGTTAGAAAAAGCATCGCAATAACCCCTATTCCGCCTCTTCCAGAACCCGACGAGAGTAACAAAAATGATGTCCCCAATCCTGAACCGCATAGAAAGTTCTTTTTCGGAGCTCCTCATGAATTCTTTGCTAGTAAATGTAATAACGAGCCCGTAATCCCATTCCCAACCCCAACTAGTTCTGAAATTGTTCGCCATTCACGTCATAGTCCTTTGAGGGAAAACCAATTTTTGTCGAATTTAACCTCTGATATGCATAAGCTAAGTATTCGTAGCGGCGTTGTGAATTCTACTCGTCAAGAAACCAGGGATGATTCTAGAGCGAGCACTAGTCAGCCTGATTACGTGCAGGGTCTTGTTGATGTTGTTATGAGAACCCTAAACTTTCTCAAGGTGCAAATGATTTTGTCCACCGAAGCCAATATAACTGATTGCATTCTTTATGGGGATCCCAAGTTTCGGACGATTGATGTGAGGAAGGCCTTGGATTTTGCCATAGAGCAACGTAGGGTGGTGAAACGAGTCTGTGGGGCGTTGCATTTGTATCTTGGTAGAAATGAGACGCTCTGGAAGTGTGTCGACCACATGGCTGGTAAACCCAGTGATTTCCCACAAGCAACATGGAATAGAGTTAAGCAATTCCTTACTTCATCGTCAGGGAGATCATTGTTTTTGGTTTCACGTTGCAGATATGAAGCAGGTTTGATTCTGAAGACATCGTGCCTTGAAGAGCTTGTGTTAGGGGATTTGCTTAAAATTCTGGAGTTGATGATCACGGCCAAGAAATGGATTATACATCATCATTGTGGGTGGCAGCCTATTACCATTACGCTTATGGAGAGTACAGGTGGTAACGCAGATAGTGATTTTGGTGTTGCTCTAGATCAAATATGA 1539 0.4964 MNRAGGGDKCALHTREGNGSDQVRPGASCVDGMGSDAGATSYSAAKISVWWDIANCRVPKGQDANSVAQNITSALANINYAGPVSISAYGDTNRIPPPVQHALSSTGVSLNHVPTGAKNANDKKILVDMLLWAVDNPAPANYLLISSDRDFSNALHQLSMRKYNILLAQPPPLCPSLANAAKFVWLWTTLSAGGAPLFVADSDPSSKPTTLVKPKYVRKSIAITPIPPLPEPDESNKNDVPNPEPHRKFFFGAPHEFFASKCNNEPVIPFPTPTSSEIVRHSRHSPLRENQFLSNLTSDMHKLSIRSGVVNSTRQETRDDSRASTSQPDYVQGLVDVVMRTLNFLKVQMILSTEANITDCILYGDPKFRTIDVRKALDFAIEQRRVVKRVCGALHLYLGRNETLWKCVDHMAGKPSDFPQATWNRVKQFLTSSSGRSLFLVSRCRYEAGLILKTSCLEELVLGDLLKILELMITAKKWIIHHHCGWQPITITLMESTGGNADSDFGVALDQI 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2258g00001 512 Pfam NYN domain 46 185 IPR021139 GO:0004540
Mupr2258g00001 512 CDD PIN_limkain_b1_N_like 46 170 - -
Mupr2258g00001 512 Gene3D - 41 189 - -
Mupr2258g00001 512 MobiDBLite consensus disorder prediction 308 327 - -
Mupr2258g00001 512 PANTHER LIMKAIN B LKAP 41 372 IPR024768 GO:0005777|GO:0010468
Mupr2258g00001 512 MobiDBLite consensus disorder prediction 1 25 - -
Mupr2258g00001 512 Pfam OST-HTH Associated domain 441 497 IPR025677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2258g00001 Mupr-Chr2258 3110 5040 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2258g00001 42 202 C2H2 Transcription Factor Family AT5G61190 68.323 7.30e-68 234