Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2188g00005 ATGTTGGATTACGAATGGGGGAACCCATCAACGATTACACTTGCCGGAAATGAAGGCGCCGTCGGCACAGAGCCCGACCAAACTCGCCGGCAAATCTTCGACCACACATACACCATGCTACCTGACCCCATTCCACATGGTTCTACACCAACTACCACTGGTTTCTCGCATCACCACCACTTCAGCCCACCACAACCACACCAGCACCACCCCTTCTTCGACCCACGCGCTTTCCCAAGCGGGTCCACCACTTCCTTTTCACCACCTTCGATGTTCTCACTTAACCCAATCCCACCTTTAGCTACCTCCCACTGTGGGCTTGGACCTGGTCCTGGGCTTGGGATTCTGCTCATGCCCAAGTCCGAGGATGCCGCTTCGCCCATGAACTTCAGGGGTTCTGGTCCTTATCTTGGGTCTGGACCTGGGCTTGGGCTCAACCTCGGAGTCCGCACTTACTTCAGCTCCTGCAACGACGACATCGTGAATCGTTTTTATGGTTCCAAGACAGTAGAGTCGATGTCGTCGAATTTGCCACGTTGTCAAGCCGAAGGATGCAATGCGGACCTTTCCGACGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCGAAGGCCGCCACCGTCATTGCTGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGGTTATTCCATCTTCTTTCCGAATTTGACAATGGAAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGCAAGCTCAAGAAATCCACAAATCTCAGACTTCTTTAGACAATATTGCAAGGTCCTCGCCTGAATCTGGAGTTCTATCTTCGTCGTCGCTGAAGGTGGCAGTCTCACCTCCAGATTATTTCCAGCAAAGACCAAATCAAAATAAAGGTTGCTCTTCGTCAACAACATCAGGGTCATTGTTTTTCTCAACT 960 0.5229 MLDYEWGNPSTITLAGNEGAVGTEPDQTRRQIFDHTYTMLPDPIPHGSTPTTTGFSHHHHFSPPQPHQHHPFFDPRAFPSGSTTSFSPPSMFSLNPIPPLATSHCGLGPGPGLGILLMPKSEDAASPMNFRGSGPYLGSGPGLGLNLGVRTYFSSCNDDIVNRFYGSKTVESMSSNLPRCQAEGCNADLSDAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRLFHLLSEFDNGKRSCRKRLADHNRRRRKTQQQAQEIHKSQTSLDNIARSSPESGVLSSSSLKVAVSPPDYFQQRPNQNKGCSSSTTSGSLFFST 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2188g00005 320 Pfam SBP domain 180 254 IPR004333 GO:0003677
Mupr2188g00005 320 Gene3D - 175 242 IPR036893 GO:0003677|GO:0005634
Mupr2188g00005 320 ProSiteProfiles Zinc finger SBP-type profile. 177 255 IPR004333 GO:0003677
Mupr2188g00005 320 SUPERFAMILY SBT domain 178 259 IPR036893 GO:0003677|GO:0005634
Mupr2188g00005 320 Coils Coil 238 258 - -
Mupr2188g00005 320 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 134 299 IPR044817 GO:0003677
Mupr2188g00005 320 MobiDBLite consensus disorder prediction 260 320 - -
Mupr2188g00005 320 MobiDBLite consensus disorder prediction 50 85 - -
Mupr2188g00005 320 FunFam Squamosa promoter-binding-like protein 14 171 242 - -
Mupr2188g00005 320 MobiDBLite consensus disorder prediction 247 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2188g00005 Mupr-Chr2188 19622 21973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2188g00005 1 227 SBP-box Gene Family AT1G02065 41.532 3.03e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mupr2188g00005 SBP 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2188g00005 - - var:108328505 383.259