Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2172g00002 ATGGCAAAGGTAAGAGAGAAGCTATACGTCACCGTTCCGAGTCTCTTTAGGTGCCCAATCTCCATGGACGTCATGAGGTCCCCCGTAAGCCTCTGCACCGGCGTCACATATGATCGCTCTAGCATTCAGCGCTGGCTCGACTCAGGACACGACACGTGTCCTGCCACGATGCAAGTTCTTCCCTCCAAAGACTTCATTCCCAATCTCACCCTCCACCGCCTCATCCGCCTCTGGCTCCTCTCCGCAGATTCCTCGCCGGATCCCCGCCCCGTCGCCGACCACCTCCGCGCTCTTCTCCGAGGAATCCAAACCGCCGACGAAGACCTCGCTGCCTCTCTTTCCAAAATCGCCGAATTCGCCAAAACCTCCGGCGACAACCGCCGGCGACTCTCCACCTTCCCCGGCTTCGACTCCGCCGTGGTCCGCGCGCTTGCCGGGAGCGCCTCGCGGATCGACGCGTCGGAGAACGCGATCTATCTTCTGGATTCGGTTTTCCGGGAAAACGGAAATTCGACCGGAGAGAAAATCCGACGGCTGATTCTCGACGCTCGCGAACAATGCTTTAATTCGATTATCTCCGTTTTGAGAAACGGATCTCTGAAATCGAAGGTCGAAACGGTTAGGGTTTTGGAGTTTCTCGCGAGCGATTTCCAAGCTAAGAAATCGATCTGCGAAACGCGCGGGATGTTGTCATTGCTCGCGAGTTTTTTAAAGGACGGCGAAGAGGAGCTAAACGACGCCGTTTTGTCGTTGCTCGGTGTCGTTTCGGTGACTCACTCGGCGAAGGTGGAACTGGTTAATTGCGGAGTGGTCGAGGTGGTTTCGGAGTTGCTGCGAGCGAGTTCGGCGGCAAAGGCGGAGAGGTGTCTGAGGATGTTGGCAGTGATGGCGACGTGCGCGGAGGGGCGGGAGGCGATGGCGAAGGAGCCGTCGTGCGCGGTGGAGGTGGTGGAGAGAGTGACCAAGGCATCGAAGGCCGCGGCGGAGGACGCCGTGGCGGTGCTGTGGAGTCTGTGCTGTTTGTGCGGGAATGTGAAGGTGAGGGATGACGTGGTAAAGCGAAACGGCGTCGTGGTGATTTTGTTGGTTATGCAGAGGGGGTGGGAGGAGCACGTGAAGAGCATGTGCGTGGATTTGATTAAGGTTTTGAAGAGTTCGTGCAAGAACGGGAAAGAAGAAATGGAAGACAATGGGAGGGCGTTGGCCATTGAATGGTAG 1218 0.5722 MAKVREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQRWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSADSSPDPRPVADHLRALLRGIQTADEDLAASLSKIAEFAKTSGDNRRRLSTFPGFDSAVVRALAGSASRIDASENAIYLLDSVFRENGNSTGEKIRRLILDAREQCFNSIISVLRNGSLKSKVETVRVLEFLASDFQAKKSICETRGMLSLLASFLKDGEEELNDAVLSLLGVVSVTHSAKVELVNCGVVEVVSELLRASSAAKAERCLRMLAVMATCAEGREAMAKEPSCAVEVVERVTKASKAAAEDAVAVLWSLCCLCGNVKVRDDVVKRNGVVVILLVMQRGWEEHVKSMCVDLIKVLKSSCKNGKEEMEDNGRALAIEW 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2172g00002 405 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Mupr2172g00002 405 Gene3D - 86 402 IPR011989 -
Mupr2172g00002 405 SUPERFAMILY ARM repeat 183 397 IPR016024 -
Mupr2172g00002 405 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Mupr2172g00002 405 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
Mupr2172g00002 405 CDD RING-Ubox_PUB 13 65 IPR045210 -
Mupr2172g00002 405 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Mupr2172g00002 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 85 IPR013083 -
Mupr2172g00002 405 PANTHER WDSAM1 PROTEIN 11 389 IPR045185 GO:0061630
Mupr2172g00002 405 SUPERFAMILY RING/U-box 8 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2172g00002 Mupr-Chr2172 30461 32490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2172g00002 1 384 U-box Gene Family AT3G18710 36.700 5.61e-72 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2172g00002 - - gmx:100786235 603.208