Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2128g00001 ATGTCCAAGTCTAGCTCCAATCCAAATGCAGATCCGACCCGAATACTTCACCCGGAGGATCCGTATACCACCGCGGACCCTCACGTTCCGCTCCGGAACCTGTTCCTGGTTCGGACCAGAATGGATTCTCTACAACGCTTCCTATCCCAATCCATCGAGACCAAAGCTCCTCTCACCTCCGATCAAATCGCCATGGTCTCCGACCAGACAGTCTCCGCCATCCACCAAATCATCGTCAACGGCGCCGCCCTCGTTTCTCACTCCCAAAGTTCCACCACCGCCGTAGCCGCCGCCGTATCGCCGGATCCACCATCGTATCCGAAGAAGCCGAAGCCAGAACCCTCCGCCAACGATAAAGCCAAGAAACTAGTCGATTCCAAAGTCGAGCTTCTCGAAGACGACGACGCCGTTGAAGACTTCGACGATGACAGCGAAATCGTGGAGCTCGACGCCGTGGAAATCCTCGCGGAGCACATCCACTTCTGCGAGATCTGTGGGAAAGGGTTCCGGCGCGACGCGAACCTCCGCATGCACATGCGCGCGCACGGGGACCAGTTCAAGACACCGGAGGCGCTGGCGAAGCCGTCGGAAACAGGTGCGCCCCGCCGCCCGACGCAGTTCTCGTGTCCGTTCGCAGGATGCAACCGGAACAGGCTGCACGGGCGGTTCCGGCCGCTGAAATCGGTGGTGTGTGTGAAGAACCACTTCAAGAGGAGCCACTGCCCGAAGATGTACTCGTGCAATCGGTGCCACAAGAAGCACTTCTCGGTGCTTTCGGATTTGAGGAGCCACGCGAAGCACTGCGGCGAGTCCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCGCGGAAGGACAAGTTGTTCGGACACATTGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCGTGTGACGAAGAGGACAAAGGGAAACAAGTGGTGGAGGGCCATGAAATTGAAGATCCGATATTGATGACTGAAAGTGAATTTGAATTGGGCAAATGCTTTCTGGATGAAGAGTTGCCGGAAGGGTTCTTTGATGATTTTGGATCCATTGATAACTACTGTTTGCGGGAAGAGAAAATGAAAGCAGCTCGACCCTTTATGAATGTTGAGATGGTGCCTTATTGCCCTCAGGAGTCGTTCGGAAATGTGGTGTTCGCAGAGCTTAATGCAATTAGTCTAGGTGCTATATTCGTTTGGAAGCTGGGTGTGCGAAGTGTCATCATAGAATGCCCACACTATGCATCATGA 1251 0.5524 MSKSSSNPNADPTRILHPEDPYTTADPHVPLRNLFLVRTRMDSLQRFLSQSIETKAPLTSDQIAMVSDQTVSAIHQIIVNGAALVSHSQSSTTAVAAAVSPDPPSYPKKPKPEPSANDKAKKLVDSKVELLEDDDAVEDFDDDSEIVELDAVEILAEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALAKPSETGAPRRPTQFSCPFAGCNRNRLHGRFRPLKSVVCVKNHFKRSHCPKMYSCNRCHKKHFSVLSDLRSHAKHCGESRWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEDKGKQVVEGHEIEDPILMTESEFELGKCFLDEELPEGFFDDFGSIDNYCLREEKMKAARPFMNVEMVPYCPQESFGNVVFAELNAISLGAIFVWKLGVRSVIIECPHYAS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2128g00001 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Mupr2128g00001 416 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 315 IPR044300 GO:0010044|GO:0010447
Mupr2128g00001 416 FunFam Zinc finger 45-like 157 183 - -
Mupr2128g00001 416 SUPERFAMILY beta-beta-alpha zinc fingers 157 183 IPR036236 -
Mupr2128g00001 416 MobiDBLite consensus disorder prediction 1 27 - -
Mupr2128g00001 416 SMART c2h2final6 245 267 IPR013087 -
Mupr2128g00001 416 SMART c2h2final6 207 240 IPR013087 -
Mupr2128g00001 416 SMART c2h2final6 160 182 IPR013087 -
Mupr2128g00001 416 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Mupr2128g00001 416 Gene3D Classic Zinc Finger 231 301 - -
Mupr2128g00001 416 Gene3D Classic Zinc Finger 160 183 - -
Mupr2128g00001 416 MobiDBLite consensus disorder prediction 95 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2128g00001 Mupr-Chr2128 774 2463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2128g00001 131 305 C2H2 Transcription Factor Family AT1G34370 57.377 6.56e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr2128g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2128g00001 - - gmx:100809135 517.309