Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2103g00004 ATGGCTTATGCTGCAATGAAGCCCACTAAGCCCGGTTTGGAGGAGTCTCAGGAGCAGATTCATAAGATTAGGATCACGCTTTCCTCCAAGAACGTCAACAATCTCGAGAAGGTTTGTGCTGACCTGGTTCGTGGTGCCAAGGACAAGCACCTCAGGGTCAAGGGACCTGTTAGGATGCCAACTAAAGTTCTTCACATCACCACCAGGAAATCCCCATGTGGTGAAGGCACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAGTCATTGACCTCTACAGTTCCCCTGATGTGGTTAAGCAGATTACCTCAATCACAATTGAACCTGGTGTCGAGGTGGAGAGTCATACAGTAGAAAAGGTTTTAGTCCCCCATGTCCCTGAGCAAGTCTCAGAGCTTTATGGTTCTGCTCTTGTACAGCTTGCTCTGCAGACTCTTGCTCGTTTTAACTTTAAGGTTCTGTTAGCAATAGTAAGTAAAAAGAATGGGAACTTGACTGAGAAAATGAAGGAAAGTGAGGGAAACTACGAGAAAAAGAAGAGTTATGACAAGGTCCAAGACGACCTTTTGACGGCCCTGGCGGATTCCCCCACCCACCGTGCCGTCTAA 615 0.4764 MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVNNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVESHTVEKVLVPHVPEQVSELYGSALVQLALQTLARFNFKVLLAIVSKKNGNLTEKMKESEGNYEKKKSYDKVQDDLLTALADSPTHRAV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2103g00004 204 Pfam Ribosomal protein S10p/S20e 24 116 IPR027486 -
Mupr2103g00004 204 Gene3D Ribosomal protein S10 domain 6 119 IPR036838 -
Mupr2103g00004 204 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mupr2103g00004 204 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mupr2103g00004 204 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mupr2103g00004 204 SMART Ribosomal_S10_2 24 118 IPR027486 -
Mupr2103g00004 204 NCBIfam 30S ribosomal protein S10 21 116 IPR005729 GO:0003735|GO:0006412|GO:0015935
Mupr2103g00004 204 Hamap 30S ribosomal protein S10 [rpsJ]. 20 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mupr2103g00004 204 SUPERFAMILY Ribosomal protein S10 22 116 IPR036838 -
Mupr2103g00004 204 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 117 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mupr2103g00004 204 FunFam 40S ribosomal protein S20 7 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2103g00004 Mupr-Chr2103 8288 10504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2103g00004 1 116 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 89.655 1.64e-73 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2103g00004 K02969 - gmx:100500017 230.72