Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2081g00013 ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAGCCCTCCGACACTGTTATGGCTGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGATAATTATCCATGTGGGCAGCAATTGCTGATTCACAATGGCAAGGTTTTGAAAGACGAAACTACCTTAGTAGAGAACAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACTACAGGTTCTGCTGCAGTTTCAACTGTTCAGTTTTTCTTCTCTGTATTAGCTATTGTGAATTGTGCCTGTCAGCCTGCCAGCAATCCTTCTACTACTGTATCAACGTCAAATTCTGCACCTGCTTCTGATATCCCAGTGCAAACTCAGGCTGTAAACAACAGTTCATCTAACACAGATGTCCCAACTACAAATGTGTCTGCAGATACATATGGTCAGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACCATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGATACAGTTAGTCGTGCTCTTCGGGCTGCTTATAATAACCCAGAGCGTGCTATAGATTACTTATATTCTGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCACTACCCAGGTAGTCAGACAACTGAAACAGCTGGGATTTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTGGTACTGGTGCCGGACTTGGATCACTTGACTTCCTTAGAAATAATCCCCAGTTTCAAGCATTACGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGCAAGCAGAATCCCAATCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCGGAAGGAGATATATTTGATCAGCCTGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCGATGGGATTTGATAGAGCCTCGGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTAGCAGCCAACTACTTATTGGAGAATGCTGGAGACTTTGAAGATTAA 1158 0.4361 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTTGSAAVSTVQFFFSVLAIVNCACQPASNPSTTVSTSNSAPASDIPVQTQAVNNSSSNTDVPTTNVSADTYGQAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPHYPGSQTTETAGISSGAVPVGPNSSPLNMFPQETISGTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPNLLRLIQEHHGEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2081g00013 385 Pfam XPC-binding domain 260 315 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mupr2081g00013 385 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mupr2081g00013 385 SUPERFAMILY XPC-binding domain 257 323 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mupr2081g00013 385 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Mupr2081g00013 385 NCBIfam UV excision repair protein Rad23 1 384 IPR004806 GO:0006289
Mupr2081g00013 385 FunFam UV excision repair protein RAD23 homolog 155 205 - -
Mupr2081g00013 385 SMART uba_6 341 378 IPR015940 -
Mupr2081g00013 385 SMART uba_6 162 202 IPR015940 -
Mupr2081g00013 385 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mupr2081g00013 385 Pfam UBA/TS-N domain 162 200 IPR015940 -
Mupr2081g00013 385 Pfam UBA/TS-N domain 341 376 IPR015940 -
Mupr2081g00013 385 Gene3D - 1 80 - -
Mupr2081g00013 385 CDD Ubl_Rad23 1 74 - -
Mupr2081g00013 385 FunFam UV excision repair protein RAD23 B 250 316 - -
Mupr2081g00013 385 CDD UBA1_Rad23_plant 156 205 - -
Mupr2081g00013 385 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 339 379 IPR015940 -
Mupr2081g00013 385 PRINTS DNA repair protein Rad23 signature 352 366 IPR004806 GO:0006289
Mupr2081g00013 385 PRINTS DNA repair protein Rad23 signature 286 308 IPR004806 GO:0006289
Mupr2081g00013 385 PRINTS DNA repair protein Rad23 signature 367 382 IPR004806 GO:0006289
Mupr2081g00013 385 PRINTS DNA repair protein Rad23 signature 335 351 IPR004806 GO:0006289
Mupr2081g00013 385 Gene3D - 251 316 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mupr2081g00013 385 FunFam UV excision repair protein RAD23 1 80 - -
Mupr2081g00013 385 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 374 - -
Mupr2081g00013 385 SMART CBM 258 301 IPR006636 -
Mupr2081g00013 385 Gene3D - 155 205 - -
Mupr2081g00013 385 SUPERFAMILY UBA-like 159 210 IPR009060 GO:0005515
Mupr2081g00013 385 SUPERFAMILY UBA-like 320 382 IPR009060 GO:0005515
Mupr2081g00013 385 Gene3D - 332 380 - -
Mupr2081g00013 385 SMART ubq_7 1 75 IPR000626 GO:0005515
Mupr2081g00013 385 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 160 203 IPR015940 -
Mupr2081g00013 385 FunFam UV excision repair protein RAD23 homolog 332 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2081g00013 Mupr-Chr2081 88555 95659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2081g00013 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 9.82e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2081g00013 K10839 - gmx:100819019 655.595