Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2061g00001 ATGGGCAACATCTCAAGCAACGGCGGTAACCCCCGTCGCCGACACAGCGGAGGTTCAAGGCGGAGTCATCCGCCGCCTCCTCCGCCGGTGACGCCGCAGCCTGAGATCGGCGCGAATCCGTTTGTGTATCATGGTACTGCACAGTACCCGAACCCCCCCCTGCATTACCCGCAGTACCATTACCCGGGTTACTATCCTCCGGTGCCTATGCCTCATCATCAACATCAGCATCAGCATCAGCATCATCATCATCATCATCAACATCAACATCAACATCAGCATCAGCATCATCCACAGATGGACCCGGCGTGGATTCAAGGGCGTTACCCTTGTGGTCCAGTGACGCCTAACCCCGCACCCTTTGTCGAGCATCAGAAGGCCGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGACCCTTAGAATTGAACCCGATCAGGAAAACCCTTCACACTTCCTTCTCTCGTTTACGTTCGACGCCACCGTTTCTGGGAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAGGACTGCATCCTCACACCAATGAAGGAAAACCATCTTGCACCGGTGACTGTGAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGCCAGCCAGCTGGAACTGGTATTGATTTTTCAATTTTTGAGGAGTCTGAGTTAATGAAAGTGGGTGACCTGGATGTCTACCCTCTAGCAGTAAAGGCAGATGCATCCCCTGGTAATCATGATGAGTCAGATAGAACTGCAACATCTGGTAACACAAACTCTCAAACAACCCAAGCGGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTGTTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAACGGAGAATGACTTGGAAGAGAATGACCAAGGAAAAGAATGCGTCATATGCTTGTCAGAGCCTCGTGATACAATTGTTCATCCCTGCCGGCATATGTGTATGTGCAGCGGATGTGCTAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGTAGACAACCAGTTGAGAGGCTTTTGGAGATAAAG 1086 0.489 MGNISSNGGNPRRRHSGGSRRSHPPPPPPVTPQPEIGANPFVYHGTAQYPNPPLHYPQYHYPGYYPPVPMPHHQHQHQHQHHHHHHQHQHQHQHQHHPQMDPAWIQGRYPCGPVTPNPAPFVEHQKAVTIRNDVNIRKETLRIEPDQENPSHFLLSFTFDATVSGSITIYFFAKEGEDCILTPMKENHLAPVTVNFQQGLGQKFSQPAGTGIDFSIFEESELMKVGDLDVYPLAVKADASPGNHDESDRTATSGNTNSQTTQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSTENDLEENDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2061g00001 362 MobiDBLite consensus disorder prediction 239 261 - -
Mupr2061g00001 362 MobiDBLite consensus disorder prediction 21 35 - -
Mupr2061g00001 362 CDD mRING-HC-C3HC5_MGRN1-like 311 352 IPR045195 -
Mupr2061g00001 362 SMART ring_2 313 351 IPR001841 -
Mupr2061g00001 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 361 IPR013083 -
Mupr2061g00001 362 ProSiteProfiles Zinc finger RING-type profile. 313 352 IPR001841 -
Mupr2061g00001 362 MobiDBLite consensus disorder prediction 1 46 - -
Mupr2061g00001 362 MobiDBLite consensus disorder prediction 74 93 - -
Mupr2061g00001 362 SUPERFAMILY RING/U-box 312 357 - -
Mupr2061g00001 362 MobiDBLite consensus disorder prediction 246 261 - -
Mupr2061g00001 362 FunFam probable E3 ubiquitin-protein ligase LOG2 297 362 - -
Mupr2061g00001 362 Pfam Zinc finger, C3HC4 type (RING finger) 311 357 - -
Mupr2061g00001 362 MobiDBLite consensus disorder prediction 65 99 - -
Mupr2061g00001 362 PANTHER MAHOGUNIN 1 362 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2061g00001 Mupr-Chr2061 19963 23643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2061g00001 35 332 C3H Transcription Factor Family AT3G09770 55.229 3.14e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2061g00001 - - aprc:113862864 540.036