Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2054g00004 ATGGCTTTTCTGGGTCCAGTTCACCGTCTGCTTCGCCATTCCCCACTTCTTCATTCTCTTCGTCTCAGCTCAACACTCACTTCCCCCAAACTTTTCGTTAGCGGTCTTTCTAGACTGACAACAGATGAAAAACTTAAGGAGACATTTTCTTCCTTTGGTCAGCTGGTTGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCGAAGGGATTTGCTTTTGTAACTTATACAACCATAGAAGAAGCCGAAAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAGCCTAGACCTCCTCAGCAATCACAGTCTCAGCCCTCTGAAACAGGTTTCACTGTTAACAAAACGGTTGGGTGGTGTGGTTGA 408 0.4436 MAFLGPVHRLLRHSPLLHSLRLSSTLTSPKLFVSGLSRLTTDEKLKETFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSETGFTVNKTVGWCG 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2054g00004 135 FunFam RNA binding protein 17 129 - -
Mupr2054g00004 135 Gene3D - 21 128 IPR012677 -
Mupr2054g00004 135 PANTHER NUCLEOLAR PROTEIN 8 23 134 - -
Mupr2054g00004 135 SMART rrm1_1 30 103 IPR000504 GO:0003723
Mupr2054g00004 135 MobiDBLite consensus disorder prediction 105 135 - -
Mupr2054g00004 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Mupr2054g00004 135 SUPERFAMILY RNA-binding domain, RBD 28 125 IPR035979 GO:0003676
Mupr2054g00004 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2054g00004 Mupr-Chr2054 18554 19809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2054g00004 31 122 Eukaryotic Initiation Factors Gene Family AT3G16380 37.895 1.98e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2054g00004 - - gmx:100306326 205.682