Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2016g00002 ATGGAGCCCTTTGAATCCGAATCAGTTAGTTCCTCCACCAAAGACCCGCAATTGGGTGTACCTTCTTCCCCTGTTCACCCCCTCGATCATGATCCTCAACCCTCAGATCTCAATCACGTTACCCAGGTGGATGATGCACTTGGTCTTGGTGAGGAGCTCCAGAACAAGTTGGATTTGAAGGATGGGGATGAGACTGAGAATAAAGGTTCGAACTTGGAAGATGGGGGTGAAAATTTGAGTGATGAAGCTGCTGCCCCAGAAGATGGTAAGGGAGAAGGGTGTGATGATGTTGTTGTTGTTGGTGGTGATGATGATGATGGTTGTAATGGTGGTGATGAGGGGTGTGAATGTATTGAAAATGTGAATGATGAGAGTGAGAGCGATAAGGTGGATGGAGATGTTGATGGGGTGGAGAACAGGGATGAGAGGAGCAGTGGTAGAGCTCAACAGTACCCTTTGAGGCCAGAGGCAGAAGACTGTGCCTTTTATCTCAAAACTGGGAATTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCACTAAGGAGGAAAAACCAGGCTAGAAAAGAGAATGAGGGAGAAAGAGAAGAACAGGCAGAAAGATCAGAGCAGACAGAATGCAAGTATTATTTAAGGTCTGGGGGCTGTAAGTTCGGAAAGGCTTGTAAGTTTAATCACACAAAAGGAAAGTATTCAGCATCCCCAATTGTAGACCTTAACTTCCTTGGCCTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACAGCTGTTGGAGGAGGTGATTCTCCTTCCGGGTATGGTAATGGAAGTTCTATTTCGTTACAGGGTGTATCACAATCATCTATATCCCAGTGGTCCTCTACTAGAACATTAAATGAATCTACTCCTTTTGTGCCGGTGATACTCTCACCTAATCCAGGGGTTTCTCCCCGAAGTTCTGAATGGAATGGATATCAGGCACCTGTCTATCTATCTGAGAGGAGTCTGCATCCACCTTCAACATATGTCATAAACAACCCAGCTATGGAAACAAATGTTTATATGCACCATCCAAAGCAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTATTTTCTAAAAACAGGGGATTGCAAGTTTAAATCTAATTGCAAATTTCACCACCCAAAAAATCGGATTGCAAGATTACCTCCCTGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACGTATTACAGCCGTTACGGACTTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCACCACCCTCAACTATGCCTGGACTTGATCAACAATCCTCGTATACAAACTCAGCTAGCGTTGATGTGGCTGAAAATGGAGGTGCCAGTGATGGGAATCAGCAGTCTGTGTAA 1485 0.4492 MEPFESESVSSSTKDPQLGVPSSPVHPLDHDPQPSDLNHVTQVDDALGLGEELQNKLDLKDGDETENKGSNLEDGGENLSDEAAAPEDGKGEGCDDVVVVGGDDDDGCNGGDEGCECIENVNDESESDKVDGDVDGVENRDERSSGRAQQYPLRPEAEDCAFYLKTGNCKFGFNCKFNHPLRRKNQARKENEGEREEQAERSEQTECKYYLRSGGCKFGKACKFNHTKGKYSASPIVDLNFLGLPIRVGEKECHYYMRTGSCKFGANCKFNHPDPTAVGGGDSPSGYGNGSSISLQGVSQSSISQWSSTRTLNESTPFVPVILSPNPGVSPRSSEWNGYQAPVYLSERSLHPPSTYVINNPAMETNVYMHHPKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQNVCTYYSRYGLCKFGPACKFDHPINPPPSTMPGLDQQSSYTNSASVDVAENGGASDGNQQSV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2016g00002 494 SUPERFAMILY CCCH zinc finger 427 455 IPR036855 GO:0046872
Mupr2016g00002 494 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Mupr2016g00002 494 PANTHER PROTEIN PHOSPHATASE RELATED 8 462 - -
Mupr2016g00002 494 Gene3D - 191 277 - -
Mupr2016g00002 494 MobiDBLite consensus disorder prediction 460 494 - -
Mupr2016g00002 494 ProSiteProfiles Zinc finger C3H1-type profile. 429 457 IPR000571 GO:0046872
Mupr2016g00002 494 MobiDBLite consensus disorder prediction 463 494 - -
Mupr2016g00002 494 MobiDBLite consensus disorder prediction 1 150 - -
Mupr2016g00002 494 Gene3D - 364 420 - -
Mupr2016g00002 494 Gene3D - 429 483 - -
Mupr2016g00002 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 158 180 IPR000571 GO:0046872
Mupr2016g00002 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 205 226 IPR000571 GO:0046872
Mupr2016g00002 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 273 IPR000571 GO:0046872
Mupr2016g00002 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 385 410 IPR000571 GO:0046872
Mupr2016g00002 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 432 455 IPR000571 GO:0046872
Mupr2016g00002 494 MobiDBLite consensus disorder prediction 54 71 - -
Mupr2016g00002 494 Gene3D - 123 190 - -
Mupr2016g00002 494 SUPERFAMILY CCCH zinc finger 203 230 IPR036855 GO:0046872
Mupr2016g00002 494 MobiDBLite consensus disorder prediction 1 19 - -
Mupr2016g00002 494 SMART c3hfinal6 154 181 IPR000571 GO:0046872
Mupr2016g00002 494 SMART c3hfinal6 202 228 IPR000571 GO:0046872
Mupr2016g00002 494 SMART c3hfinal6 383 410 IPR000571 GO:0046872
Mupr2016g00002 494 SMART c3hfinal6 249 274 IPR000571 GO:0046872
Mupr2016g00002 494 SMART c3hfinal6 429 456 IPR000571 GO:0046872
Mupr2016g00002 494 ProSiteProfiles Zinc finger C3H1-type profile. 201 229 IPR000571 GO:0046872
Mupr2016g00002 494 MobiDBLite consensus disorder prediction 122 147 - -
Mupr2016g00002 494 MobiDBLite consensus disorder prediction 98 121 - -
Mupr2016g00002 494 SUPERFAMILY CCCH zinc finger 153 182 IPR036855 GO:0046872
Mupr2016g00002 494 ProSiteProfiles Zinc finger C3H1-type profile. 383 411 IPR000571 GO:0046872
Mupr2016g00002 494 SUPERFAMILY CCCH zinc finger 388 412 IPR036855 GO:0046872
Mupr2016g00002 494 ProSiteProfiles Zinc finger C3H1-type profile. 154 182 IPR000571 GO:0046872
Mupr2016g00002 494 SUPERFAMILY CCCH zinc finger 248 274 IPR036855 GO:0046872
Mupr2016g00002 494 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2016g00002 Mupr-Chr2016 5151 10071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2016g00002 379 481 C2H2 Transcription Factor Family AT3G02830 46.602 9.41e-23 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr2016g00002 zf-CCCH 3.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2016g00002 - - gmx:100776363 676.396