Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2008g00002 ATGGAACTCACCGAAGAGCAGCGACAACAAGTAGAAGCAAACCGTGCAGCTGCGCTCGCAAAACGCAAGGCGTTCTTAGAATCCAGAGCGAAACAAGAAGAAGAACAAGAATCTTATCGCGAAGGAGAAAACAAGAAGAAGAAGAACAACCCCTGGCACCTTTTCAAGTGCCAAAAGTTCCCTCACTCTCCCAAACCCCAACCTCCAAAGTTTCTCGCCAGGCTCGAAATATGCTCTCCCGATTCCTTCTCCATCACTCCCCTCCCTCTCTCCTCTTTCCCCTTCCCCGATCACCAACACTGTCTCTCCATTCTCAACTCCACTCTCTCACACGTGATGCCGTCGCGTTACACGCAGACCAGCGAGGGCGTGAAGGCCGGCGTGTTCAAGCTCGTGGAGTACCGCCCCGTGCTCAAGCAGCTCAAGGCCGCGGCGGAGGCGCTGCAGGTGGAGGAGATTCCCTGGGGGACGTTCAACGTCGTGGAGCGTCTCTCGCACTCGTACGCGGCGGGCCGGTGGAACCCGCTGCGGCCGGAGCACCTGGCCGACGACGAGGTGGAGCGCCTGGTTGCCAAGCTTCCGACGACTCTCCTCGACGTGTTGCTCCCTTTCCAGCACGACGGTTTGAGATTCGCGCTCAGAAGAGGTGCGCGATGCCTCATCGCGGATGACATGGGCCTCGGGAAAACACTCCAGGCTATTGCTATTGCAGGGTGTTTTGCGGATGAAGGGGCTATACTTGTGGTTTGTCCTGCTGTGCTGCGGTTTTCGTGGGCGGAGGAATTGGAGCGGTGGCTTCCTTTCTGCTTGCCCACTGATGTCCATCTTGTTTTTGGCCATCAAGACAACCCTGTATATTTAACAAGAAGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAACGTCAATGGGCTCTTCTGATTGTTGATGAATCTCATCATGTGCGATGTACAAAGAAAGAAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCAAAAGTCAAGCGTATAATTCTGCTGTCAGGGACACCTTCTCTGTCAAGGCCTGGTTTGCTGGGGAAAACTAAATACGAGTTTGCAAAAACTTATTGTGATTTCAAATATATCAAAGGCATCCAAGGAAAATATTTTGCGATAAGGCGTCTGAAGGAACAGGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGTTAAAGAGATCAGATATAGTTGCTGCAAAAACTACAGTTACAGGGGTATTGAATATTGATACCTCTGAAAGGGCAAGTGAAGACATGCCTATGGAACATTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATCATTGAAGGATTAGAGAGTGCTTCGAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGGATAAATTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGACAATCAGCAGTAGTCTCATTTCGGACATCACCAGAGGTTAAAATTGCGATAGTAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACGGCACAAGATGTTGTGTTCTTGGAGCTACCACAGTGCCCAACTATAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGGGGACAAACAAATGCAGTTAATATATACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTGAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGAAAATATGATGCGATGAAAGAGATAAAGGTTGAAAGTATTTCTTGTTTAGACTCATCTTTGAGAAGTGATAATTGTGAAGAGCAATCTGCATGCAAAGATGCATTAGGTGAAACACGACTGGATAAGCAACCTTCTGCAGTAAATTCAAATGAATTAGAAGATAATCAAGATGATAATTCTGATGAGGGGACTTCTTTCGTTAACAACTCAATGCAGAGTTCTAATATTATGGCTGATGATGTTTTCTGCCAAGATTTAGGCAAGACTTCAGTTCTGGGTGGAACTTGTGATGTTGATGTTTTTGATGTTGCGGAGAGATGTCCTGAGAAGAGTTTTGAAGACAATGATCAAGATATGAAATCAGTTTCAACAACAGAAGCAGATGACAACCAGTCTGTTCCTCCAGTTGAAGCCAATGGAAATTGTTCTAATCAAGTTGATTTTCTGCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATAAAAGACCACAGCCACTTTACGAAAATTATCGACCAGAGGAACTTGAGTTGCTAAGTTCTGTTGCTGATGATGAGAAACAGGCTCATGATGAGGAACAGAAAATAGAGTTTGTATCTGTCAAGGACAACCCCGCCTATAGGCATACTCTTCTGGCTTTTGCAGGAGAGTGGAAGAATTTGAGATCAATTGAACGCAGGAAGTTACTTGGAAAACCGTTACAACTTCCTCTGGCTGTTGAATTATGCTACCTGAGTGAAAGCAATAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAAAAGACGCAAGACACCCTTAATGGAGATTAGCTATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTTTATCTGCGAAGTGGCCTTGGTAAGAAGGAAAAAGAATACAGTCAAGGCTGGAGTCTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCTGGGTAACAATTCCAAGACACCGGAATTTTTTGAAGATCTTTTTTGTAATCTTGTCTGCTATGAGGAGTATCGAATGAGAACGAGCAGCAGATTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGAGCATATAAGACCTTTGTCATTGGCAAGGAGGCGAGAGTACATAGAGAAAGTAGCACCAAATGTTGCAAAGCGGAAGAACATGCTTGAGAAACTTGTCAATGAACCAACTGAAGGCAATGCGTGGCATGGTGACCATATTGTTCCAGTATATCAAGGAGGAGGTGAATGCAAGCTGGAGAATATGAGGACTCTCTGCGTGGCCTGCCATTATGATGTTACTGCTGCACAATGTGCTGAACGACGCATCGCAAGAGCAAATGCCAGGAAACAACTAAAAGCGTTAATGAATAGCATGAAAAATGGTATTAAGGGTGCTGCTGGCACTAATATTAAGGACCATAGGGTTCTCGAAGAAGAAGGAAGTATACTTGAGGATGAGCTTTTAGTCGAGGTTCCTGGCAGTGCCTATTCTTTAGCAAGCCACTGA 3420 0.4471 MELTEEQRQQVEANRAAALAKRKAFLESRAKQEEEQESYREGENKKKKNNPWHLFKCQKFPHSPKPQPPKFLARLEICSPDSFSITPLPLSSFPFPDHQHCLSILNSTLSHVMPSRYTQTSEGVKAGVFKLVEYRPVLKQLKAAAEALQVEEIPWGTFNVVERLSHSYAAGRWNPLRPEHLADDEVERLVAKLPTTLLDVLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFADEGAILVVCPAVLRFSWAEELERWLPFCLPTDVHLVFGHQDNPVYLTRSPRVVVISYTMLHRLRKSMLERQWALLIVDESHHVRCTKKEEPGEIKAVLDVASKVKRIILLSGTPSLSRPGLLGKTKYEFAKTYCDFKYIKGIQGKYFAIRRLKEQVLQQLPPKRRQIIRLLLKRSDIVAAKTTVTGVLNIDTSERASEDMPMEHLDEPDGKLSYQELGIAKLSGFREWLALHPIIEGLESASKMIIFAHHHKVLDGVQEFICEKGINFVRIDGNTLARDRQSAVVSFRTSPEVKIAIVGILAAGFGLDFSTAQDVVFLELPQCPTIMLQAEDRAHRRGQTNAVNIYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAMKEIKVESISCLDSSLRSDNCEEQSACKDALGETRLDKQPSAVNSNELEDNQDDNSDEGTSFVNNSMQSSNIMADDVFCQDLGKTSVLGGTCDVDVFDVAERCPEKSFEDNDQDMKSVSTTEADDNQSVPPVEANGNCSNQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLYENYRPEELELLSSVADDEKQAHDEEQKIEFVSVKDNPAYRHTLLAFAGEWKNLRSIERRKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRKTPLMEISYPLPSDAVWRKVYLRSGLGKKEKEYSQGWSLTDEPLCKLCQKQCLGNNSKTPEFFEDLFCNLVCYEEYRMRTSSRFLREELFKIEHGVCTNCQLDCHKLVEHIRPLSLARRREYIEKVAPNVAKRKNMLEKLVNEPTEGNAWHGDHIVPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRIARANARKQLKALMNSMKNGIKGAAGTNIKDHRVLEEEGSILEDELLVEVPGSAYSLASH 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2008g00002 1139 Coils Coil 1 36 - -
Mupr2008g00002 1139 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1088 - -
Mupr2008g00002 1139 CDD SF2_C_SNF 461 590 - -
Mupr2008g00002 1139 SMART ultradead3 197 380 IPR014001 -
Mupr2008g00002 1139 Pfam SNF2-related domain 218 355 IPR000330 GO:0005524|GO:0140658
Mupr2008g00002 1139 Pfam HNH endonuclease 1037 1068 IPR002711 GO:0003676|GO:0004519|GO:0008270
Mupr2008g00002 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 392 IPR027417 -
Mupr2008g00002 1139 CDD HNHc 1031 1071 IPR003615 -
Mupr2008g00002 1139 Gene3D - 962 1097 - -
Mupr2008g00002 1139 MobiDBLite consensus disorder prediction 27 48 - -
Mupr2008g00002 1139 Pfam Helicase conserved C-terminal domain 477 579 IPR001650 -
Mupr2008g00002 1139 SMART helicmild6 496 579 IPR001650 -
Mupr2008g00002 1139 Gene3D - 398 671 IPR027417 -
Mupr2008g00002 1139 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 373 IPR014001 -
Mupr2008g00002 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 629 IPR027417 -
Mupr2008g00002 1139 Gene3D - 178 366 IPR038718 -
Mupr2008g00002 1139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 625 IPR001650 -
Mupr2008g00002 1139 MobiDBLite consensus disorder prediction 652 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2008g00002 Mupr-Chr2008 15696 36745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2008g00002 481 597 RAD5 or RAD16-like Gene Family AT1G11100 37.607 1.05e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr2008g00002 SNF2_N 6.4e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2008g00002 K25861 - gmx:100788690 1930.61