Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1989g00007 ATGGAGGAAGAGGAAGATGAAGTGGTGTGGTGTTGTTCCGATTCAGGCGACGATGATGATATCGAAGAAAGGAAATCGCAGAATGTGGATGCCCTGGTCAGGGGCAACCTCATCGTGAAGAGACAATCGTTGTTGCCGCGACTTTTATCTGTATCGCAAGGAGCTGCTGTTTGTAGAAAACCCTTTAAACCTCCATGCTCTAAATCTCATGCTTCCGGTTACAATCAGGACCTCACTCGGAGGCTTTACGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCTATTCCTAGTCCTAGTCCTATTCCTAGTCCTAGACCTGTTTTGGAGGAGTTCAACAAATTCAATGTTGATGTTGCTGAGGAGGTAAAACCATCTTTGCCCCCCGGGATTGATCCTCTAGTATTGTGGCACCCTCAAGACTCCCAGGATGATCCTTCTAATGCTCATTTGACCGCGATAACAGTCGACCCGTTGCTTCTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTAACTGTGTCTCAGGGCTGTGTACCTCTCCAAATATTCACGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTAATTTGTCAAGGCTTTCATGGCAAACCAATGGTTCGAAAGGCCATTATTGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCCGTAAGTGGGTTGGAGAAAGAATTCATCTTGTTGCTCTATGTGAAAGCACAAGACAAGATGTTGTCTCTGGGATTGACAATTTTACAAGTCCTCAAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCGTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGATGAGGCTCATAGACTTAAAAATGATCAGACAATAACAAATCGGGCATTGGCAGCTCTCCCCTGCAAACGTAGAATTTTGTTGTCAGGAACTCCTTTGCAAAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTAATATTGCACATTTTCGACATTACTATGAGGCACCGATTATTTGTGGGAGAGAACCTGCTGCCACTGTGGAAGAGAAGAAGCTAGGTGCTGAACGGTCTGCTGAATTAAGTGTTGAAGTTAATCGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCTAAGGTTAAGCGGGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCCCTCAAAAAGTTGTGCAATCATCCAAAGCTTATCTATGATACCATAAGAAGTGGAAGTCCAGGAACTTCAGGTTTTGAGGACTGTATCCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGTCGGGAGGGCATGGAGCGTGGGTCGAGCTATCTGGGAAAATGCATGTCTTAGCAAGATTACTTGCCCATTTACGTCAGAGAACAAATGATCGTATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTTACTTGAGGCTTGATGGCTCTACATCAATCAGTAAAAGGCAGAAGTTAGTCAATTGCTTTAATGATCCATCCAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAAAAGAAAAGAGTTTATATTTATAGATTTCTGACTTCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCGAAAGAAGGGCTGCAAAAGGTCATTCAACAGGAGCAAGCTGATAGCCTTGTGGCACAGGGTAACTTTCTTTCAACAGAGGATCTTCGCGATTTGTTTACTTTTCATGAGAACATCAAGTCAGAGATTCATGAAAAGATGCGATGCAGTCGATGTCAAACATTCGATGGCCCTGGAAGCAATGATGCCCAATCAACAATAACAGATAGTGAATCTGATGAAGAAACATCTGATATTGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAGGATTTAGGAAGTTGGGGCCATCATTTTTCCCCAACTTCTGTACCAGATGCTATCCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTAACGGACGACTGGTACCCCTTGAGTCTGTCATCAGTCCCAAGCTACAGCAAAAGGATCCAAATAAGGAATTTGTCAAGTCAAAGCAGAACGGTAAACAAAAGCCCACTCCTTTTTCTTTACACCACAGATTATCACTGCAGTCTGCTAGTATGTCATCATCCACTCCCAATGCTTGGACGAAGGAAACACTAAATTCTCTCGGGATTACCAAAAATATTTCCATGACCAACTACTCTCTCGTAAGCAAAGTATTACCACAGAAAAGATCATGTCCTACTAATCTCAATCATGATAATTTTGAGTAA 2622 0.4256 MEEEEDEVVWCCSDSGDDDDIEERKSQNVDALVRGNLIVKRQSLLPRLLSVSQGAAVCRKPFKPPCSKSHASGYNQDLTRRLYARKRFVPWGSSIPSPSPIPSPRPVLEEFNKFNVDVAEEVKPSLPPGIDPLVLWHPQDSQDDPSNAHLTAITVDPLLLRYLRPHQREGVQFMFNCVSGLCTSPNIHGCILADDMGLGKTLQSITLLYTLICQGFHGKPMVRKAIIVTPTSLVSNWEAEIRKWVGERIHLVALCESTRQDVVSGIDNFTSPQSNLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGNIAHFRHYYEAPIICGREPAATVEEKKLGAERSAELSVEVNRFILRRTNALLSNHLPPKVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWSGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLTSGTIEEKVYQRQMSKEGLQKVIQQEQADSLVAQGNFLSTEDLRDLFTFHENIKSEIHEKMRCSRCQTFDGPGSNDAQSTITDSESDEETSDIGGFAEIAGCLQNLKRSEKQVGSPLEEDLGSWGHHFSPTSVPDAILQASAGDEVTFVFTNQVNGRLVPLESVISPKLQQKDPNKEFVKSKQNGKQKPTPFSLHHRLSLQSASMSSSTPNAWTKETLNSLGITKNISMTNYSLVSKVLPQKRSCPTNLNHDNFE 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1989g00007 873 Pfam SNF2-related domain 166 438 IPR000330 GO:0005524|GO:0140658
Mupr1989g00007 873 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 657 IPR001650 -
Mupr1989g00007 873 SMART helicmild6 523 607 IPR001650 -
Mupr1989g00007 873 Gene3D - 136 403 IPR038718 -
Mupr1989g00007 873 PANTHER SNF2/RAD54 FAMILY MEMBER 52 796 - -
Mupr1989g00007 873 CDD DEXHc_RAD54 163 404 - -
Mupr1989g00007 873 Gene3D - 476 686 IPR027417 -
Mupr1989g00007 873 FunFam DNA repair and recombination protein RAD54-like 484 654 - -
Mupr1989g00007 873 FunFam DNA repair and recombination protein RAD54 132 403 - -
Mupr1989g00007 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 770 IPR027417 -
Mupr1989g00007 873 MobiDBLite consensus disorder prediction 788 810 - -
Mupr1989g00007 873 CDD SF2_C_SNF 490 618 - -
Mupr1989g00007 873 MobiDBLite consensus disorder prediction 687 708 - -
Mupr1989g00007 873 Pfam Helicase conserved C-terminal domain 498 606 IPR001650 -
Mupr1989g00007 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 404 IPR027417 -
Mupr1989g00007 873 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 354 IPR014001 -
Mupr1989g00007 873 Gene3D - 418 670 - -
Mupr1989g00007 873 SMART ultradead3 159 362 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1989g00007 Mupr-Chr1989 38743 46856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1989g00007 139 666 RAD5 or RAD16-like Gene Family AT1G02670 24.576 1.39e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr1989g00007 SNF2_N 3e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1989g00007 K10875 - gmx:100781631 1497.26