Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1985g00008 ATGGTGCAACTGGAAGCAGTGAGTGATGAAGATGAAAAGCTAGCATTTACACTTGGTTTCTGGTGTGGCACTGCAAAGGGCAAAATCTTTTCCACACCTATCATAATGCCATTCAGGAGCATAGTGCGTGAGCTCAAGGAGATTGGAGAGAGCATCAGCAACATGTATAGAAGAGGGGGAGAAGCCAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCTTACCATCCTTACCACCACCATCGTTGTCTTCATCGCAATCATCACCTCAGAGTCGGTGGGCCAACTTGCCACCTGAGTTGCTATTAGACATAATTCAAAGGTTGGAAGCGAGTGAAACTTCCTGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTCCCCATATCACTAAAGCAGCCTGGACCAAGAGACTCTCCAACCCAGTGCTTTATTAGGAGAGAAAGAGTGACTTCAACATATTGTTTATATCTCGGTCTTAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTAGAAGGGCAACACGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGGACTAGTAACACTTACATTGGAAAACTGAGGTCTAACTTTCTGGGTACCAAGTTCACGATCATGGACGGCGAGCCCCCACATGATTCTTCACTTCCATTGGATTGCAAGTTGCAGCAAAGAGTCCATATGAAGCAGGTGCTTCCTAAGGTTGCTGCTGCTAACTACAAAGTGGCCACAGTATCTTATGAACTCAATGTCCTCAGAACAAGAGGTCCAAGGCGAATGCGGTGCACAATGCACTTAATCCCCATATCTGCAATCCAAGAAGGAGGAACTGCTCCTACTCCTTTGAAGTTTACCAATTACCTTAACGAGCAAGCATCCACCACCACCACCACGTTGCAAGACTCAAAAGGAAAGAAGCCAGAAGTTGTTGAGTTTGACTCAACTGGCACTGACAATGCTCAAGAATCAACTCATAATGCAAGGGAACCATTGGTTTTGAAAAACAAAGCCCCTAGATGGCATGAGCAACTTCAATGTTGGTGCTTGAATTTCAAGGGTAGGGTTACAGTGGCCTCAGTGAAGAACTTCCAGCTTGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTGATACTACAATTTGGGAAAATTGGGAAGGACATATTCACCATGGACTACCGATATCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1392 0.4519 MVQLEAVSDEDEKLAFTLGFWCGTAKGKIFSTPIIMPFRSIVRELKEIGESISNMYRRGGEAKHVHRHGKSHIAPECSLPSLPPPSLSSSQSSPQSRWANLPPELLLDIIQRLEASETSWPARRALVACASVCRLWREITKDVVKTPEQCGLLTFPISLKQPGPRDSPTQCFIRRERVTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATRTEFLISLVADDFSRTSNTYIGKLRSNFLGTKFTIMDGEPPHDSSLPLDCKLQQRVHMKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGTAPTPLKFTNYLNEQASTTTTTLQDSKGKKPEVVEFDSTGTDNAQESTHNAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1985g00008 463 PANTHER TUBBY-RELATED 91 461 - -
Mupr1985g00008 463 MobiDBLite consensus disorder prediction 75 96 - -
Mupr1985g00008 463 ProSitePatterns Tub family signature 2. 448 463 IPR018066 -
Mupr1985g00008 463 Gene3D Tubby Protein; Chain A 157 463 IPR025659 -
Mupr1985g00008 463 SUPERFAMILY Tubby C-terminal domain-like 147 463 IPR025659 -
Mupr1985g00008 463 Gene3D - 91 144 - -
Mupr1985g00008 463 PRINTS Tubby superfamily signature 441 463 IPR000007 -
Mupr1985g00008 463 PRINTS Tubby superfamily signature 373 390 IPR000007 -
Mupr1985g00008 463 PRINTS Tubby superfamily signature 420 439 IPR000007 -
Mupr1985g00008 463 PRINTS Tubby superfamily signature 279 306 IPR000007 -
Mupr1985g00008 463 PRINTS Tubby superfamily signature 391 407 IPR000007 -
Mupr1985g00008 463 PRINTS Tubby superfamily signature 230 254 IPR000007 -
Mupr1985g00008 463 PRINTS Tubby superfamily signature 214 230 IPR000007 -
Mupr1985g00008 463 Pfam F-box domain 98 145 IPR001810 GO:0005515
Mupr1985g00008 463 ProSitePatterns Tub family signature 1. 391 404 IPR018066 -
Mupr1985g00008 463 SUPERFAMILY F-box domain 91 142 IPR036047 GO:0005515
Mupr1985g00008 463 CDD F-box_AtTLP-like 98 142 - -
Mupr1985g00008 463 Pfam Tub family 159 458 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1985g00008 Mupr-Chr1985 18174 21343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1985g00008 63 463 TUB Transcription Factor Family AT1G47270 62.315 3.74e-170 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mupr1985g00008 Tub 1.5e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1985g00008 K19600 - gmx:100796250 763.066