Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1956g00004 ATGGCTCAGGTTCAGGTGCCTCAGAATGCGATGCCGGGTCCCAACGGAGCTGGTGCTGGTGCTGCCGCTGGTGGAAACCAGTTCGTGACGACGTCGCTTTACGTTGGAGATCTCGACCCGAACGTCACTGACTCACAGCTCTATGACCTGTTCAACCAATTGGGCCAAGTCGTGTCCGTTAGGGTTTGCAGGGACTTGACCACCCGGAGATCGCTCGGTTACGGTTACGTCAACTATAGCAACCCACAAGATGCTGCCAGAGCATTGGATGTTCTGAATTTCACTCCTCTGAATAACAAGCCCATCCGTATTATGTATTCACATCGTGATCCCAGTATCCGTAAAAGTGGGGCAGGAAATATATTTATTAAGAATTTGGATAGGGCAATTGACCACAAGGCATTGCATGAAACCTTTTCTACATTTGGGAATATCCTTTCGTGCAAGGTAGCTACGGATTCATCTGGACAATCAAAAGGCTATGGCTTTGTTCAATTTGATAATGAGGAAGCTGCCCAAAAAGCCATAGAGAAGCTGAATGGCATGCTGTTGAATGATAAACAAGTGTATGTGGGACCCTTCCTTCGCAAACAAGAGAGAGAAAGTGCTATTGACAAGGCAAAATTCAACAATGTTTTTGTAAAGAATCTATCAGAATCAACCACTGATGATGAATTGAAGAATACTTTTGGTGAATTTGGAACTATTACTAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGTTTTGGGTTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAATTTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGATGATAGCCTCAGTGATGATAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATTACCTCTTGCAAGGTTATGAGAGACCCAAATGGCATAAGTCGTGGATCGGGATTTGTTGCATTCTCAACTCCTGAGGAGGCATCTAGAGCTGTAAGTCGTAGGCTCTTGGAGATGAATGGAAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTAGCCCAACGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGGCCTGTTGGAATGCCACCATCTGTTGGTCCTCGTGTGCCATTGTATCCTCCAGGCGGTCCAGGTATTGGTCAACAAATATTTTATGGCCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAGCAACTTGTGCCCGGTATGAGGCCAGGTGCGGCTCCTGTGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGACAACAGGGACAGCGTCCTGGTGGAAGGCGTGCAGGTTCAGTCCAGCAGTCCCAGCAGCCAGTTCCAATTATGCCACAGCAGATGCTTCCTAGGGGGCGTGTTTATCGTTACCCTCCTGGTAGGGGTATTCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGTATGTTTTCTGTTCCATATGATGTCGGTGGGATGCCCCTGCGTGATGCATCACTCTCCCAGCAAATTCCTATTGGGGCTTTGGCATCTGCTTTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGTTGGGTGAGAATCTTTATCCCCTTGTGGAACAGTTAGAGCCTGAGAATGCTGCCAAAGTGACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTTGAGTCACCAGAAGCCCTGAAAGCTAAGGTGGCTGAGGCAATGGACGTCTTAAGGAATGTTGCTCAGCAGCAGCAGGCTGGCGGTGCTGCTGATCAGCTGGCTTCATTATCACTTAATGACAACCTTGTTTCCTAA 1971 0.4678 MAQVQVPQNAMPGPNGAGAGAAAGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHETFSTFGNILSCKVATDSSGQSKGYGFVQFDNEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSEREHELKQRFEQSMKEAADKYQGANLYVKNLDDSLSDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRAVSRRLLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPLYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAGSVQQSQQPVPIMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPLRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNLVS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1956g00004 656 Gene3D - 26 119 IPR012677 -
Mupr1956g00004 656 SMART rrm1_1 120 192 IPR000504 GO:0003723
Mupr1956g00004 656 SMART rrm1_1 32 105 IPR000504 GO:0003723
Mupr1956g00004 656 SMART rrm1_1 314 390 IPR000504 GO:0003723
Mupr1956g00004 656 SMART rrm1_1 211 283 IPR000504 GO:0003723
Mupr1956g00004 656 MobiDBLite consensus disorder prediction 1 20 - -
Mupr1956g00004 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 394 IPR000504 GO:0003723
Mupr1956g00004 656 SMART poly_2 569 632 IPR002004 GO:0003723
Mupr1956g00004 656 SUPERFAMILY RNA-binding domain, RBD 206 298 IPR035979 GO:0003676
Mupr1956g00004 656 CDD RRM2_I_PABPs 117 193 IPR045305 -
Mupr1956g00004 656 PANTHER RNA BINDING PROTEIN 30 93 - -
Mupr1956g00004 656 Pfam Poly-adenylate binding protein, unique domain 565 629 IPR002004 GO:0003723
Mupr1956g00004 656 CDD RRM4_I_PABPs 312 394 - -
Mupr1956g00004 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723
Mupr1956g00004 656 FunFam Polyadenylate-binding protein 553 635 - -
Mupr1956g00004 656 Gene3D - 120 192 IPR012677 -
Mupr1956g00004 656 Gene3D - 553 636 - -
Mupr1956g00004 656 CDD RRM1_I_PABPs 32 111 IPR034364 -
Mupr1956g00004 656 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
Mupr1956g00004 656 CDD RRM3_I_PABPs 209 288 - -
Mupr1956g00004 656 SMART rrm2_1 211 283 IPR003954 GO:0003676
Mupr1956g00004 656 SMART rrm2_1 314 385 IPR003954 GO:0003676
Mupr1956g00004 656 SMART rrm2_1 120 192 IPR003954 GO:0003676
Mupr1956g00004 656 SMART rrm2_1 32 105 IPR003954 GO:0003676
Mupr1956g00004 656 SUPERFAMILY PABC (PABP) domain 498 650 IPR036053 GO:0003723
Mupr1956g00004 656 FunFam Polyadenylate-binding protein 296 405 - -
Mupr1956g00004 656 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 557 634 IPR002004 GO:0003723
Mupr1956g00004 656 Gene3D - 196 295 IPR012677 -
Mupr1956g00004 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Mupr1956g00004 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Mupr1956g00004 656 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 630 IPR006515 GO:0003723
Mupr1956g00004 656 MobiDBLite consensus disorder prediction 479 499 - -
Mupr1956g00004 656 Gene3D - 296 402 IPR012677 -
Mupr1956g00004 656 SUPERFAMILY RNA-binding domain, RBD 308 419 IPR035979 GO:0003676
Mupr1956g00004 656 FunFam Polyadenylate-binding protein 117 200 - -
Mupr1956g00004 656 FunFam Polyadenylate-binding protein 201 295 - -
Mupr1956g00004 656 FunFam Polyadenylate-binding protein 18 116 - -
Mupr1956g00004 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 382 IPR000504 GO:0003723
Mupr1956g00004 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Mupr1956g00004 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Mupr1956g00004 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1956g00004 Mupr-Chr1956 8311 13144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1956g00004 30 655 Eukaryotic Initiation Factors Gene Family AT1G49760 75.667 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1956g00004 K13126 - gmx:100780329 1163.67