Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1948g00007 TGCCACAATGGTCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAGGAGCTTGGAGATATTAGGTGTCTAGCACTGGAGAAGGTAGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGGTGTCCTGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATACAGTTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACATTCCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCACCGTTATGTGAAGTCGAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTTCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAACTACAGCTATAGCCTTGAGGTTGGGGCAAATGGCAGGAAAATCATTTGGGAGGGTACACCACGAAGTATTCGTGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGTCTCATTATTCAACGGAACATGGCCTTATTTTTCTCCGGTGGGGATAAGAAGGAGCTGAAACTAAGAGTTACTGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGTGTAAGGCTAATATGGCTTTTGAAATCTTCAGTTTTCCCAAGGATGAGACTGGAACCGAATTTGGCTCGAATTTTCTGTGA 804 0.4453 CHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKIIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGCKANMAFEIFSFPKDETGTEFGSNFL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1948g00007 267 SUPERFAMILY TRAF domain-like 40 232 - -
Mupr1948g00007 267 CDD Sina 101 229 - -
Mupr1948g00007 267 ProSiteProfiles Zinc finger SIAH-type profile. 40 100 IPR013010 GO:0008270
Mupr1948g00007 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 93 IPR013083 -
Mupr1948g00007 267 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 94 228 IPR008974 GO:0005515
Mupr1948g00007 267 FunFam E3 ubiquitin-protein ligase SINAT5-like 96 228 - -
Mupr1948g00007 267 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 234 - -
Mupr1948g00007 267 FunFam E3 ubiquitin-protein ligase SINAT3 37 95 - -
Mupr1948g00007 267 Pfam Seven in absentia protein family 29 228 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1948g00007 Mupr-Chr1948 31892 33238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1948g00007 1 235 C3H Transcription Factor Family AT2G41980 82.128 1.02e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1948g00007 K04506 - cave:132180687 517.309