Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1940g00004 ATGAATCGGAGGGGAGACTCTGGGTCATGTTGGTTCGCCTCCCTCAGTGACTCTCACAGTGATAGAGAGATATGGGNNAGGATCGAGAACAAGATCAATAGGCAAGTCACGTTCTCCAAGAGGAGGTCTGGTTTGCTCAAGAAAGCCCACGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATAGTCTTCTCCACCAAAGGCAAACTCTTTGATATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCGGAGAGGCAGCTTGTTGCCAATGATCAGCCTCAAAGTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTCCTACAGAAAAATCAGAGGAATTTTATGGGACAAGATTTGGATGGCCTAAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATAGTGCTCTCAAACACATTAGATCACGGAAGAATCAACTCATGTATGAATCTATTTCGGAGCTTCATAAAAAGGTGAGT 510 0.4333 MNRRGDSGSCWFASLSDSHSDREIWXRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFDMERILERYERYSYAERQLVANDQPQSENWTLEHAKLKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELHKKVS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1940g00004 170 ProSiteProfiles K-box domain profile. 99 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr1940g00004 170 Pfam K-box region 94 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr1940g00004 170 Gene3D - 30 97 IPR036879 GO:0003677|GO:0046983
Mupr1940g00004 170 Coils Coil 136 156 - -
Mupr1940g00004 170 FunFam MADS-box transcription factor MADS-MC 30 97 - -
Mupr1940g00004 170 SUPERFAMILY SRF-like 26 103 IPR036879 GO:0003677|GO:0046983
Mupr1940g00004 170 Coils Coil 99 119 - -
Mupr1940g00004 170 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 156 - -
Mupr1940g00004 170 CDD MADS_MEF2_like 27 90 IPR033896 GO:0000977|GO:0045944
Mupr1940g00004 170 SMART madsneu2 1 77 IPR002100 GO:0003677|GO:0046983
Mupr1940g00004 170 ProSiteProfiles MADS-box domain profile. 27 74 IPR002100 GO:0003677|GO:0046983
Mupr1940g00004 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 72 IPR002100 GO:0003677|GO:0046983
Mupr1940g00004 170 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Mupr1940g00004 170 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Mupr1940g00004 170 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1940g00004 Mupr-Chr1940 6371 11799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1940g00004 27 168 MADS-box Gene Family AT1G26310 66.000 2.13e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr1940g00004 K-box 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1940g00004 K09264 - gmx:100816836 264.618