Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1936g00001 ATGGGGTGTGATTATGGGGGAAAGTTAAATGTGAGAAGGCCTCATTTTTATGTGGTTTATTCCTCTTCCTTCAGCTCTCACAGACTGAAAATTCCAGATGGATTTGTCTGTCACATGGAGGGTAGGACATACGGATCAGTTTCATTGATTGGTCCTAGTGGAAATGCATGGACTGTGCAATTAATTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGACATTTGTGGTGGATCATCGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGAGGGTCACTTGCATTTTACTGTGCAAGTATTTGATACGGATGCGTGTGAGAAAGAGACAGCATTTCTTTCTGAATGCAGTCAAAGTTCATGTGACTTTGATAATATTAAAGGACAGAAAAGAGATACAAGGGAGAGTTCTTTGGATGCTGTTGTTGAAGGTGGTGTTCCAAAGAAAATGAGAGGTGGTACCAATGAGAACCAGGAACTGGAGCTGGGTATTGTTGGTAAAGAACTATCCTTGTATGAGGTAGTAAGACCAATTAGTATGGTCAGAGAAAATGAAGAAACCTTCAAAGCATGTTCGGCTAATGATGGCCCTATACCTTTTCACATGGAAAATAGGAATGAACATGAAGGTACAAAGGCAGCCATCCTCTATAGAAGTGGGAAGGAAGATTATCATTATATTTTAAATGGAGTTTCATTATCAAATGTGTCAGCAGCACAGGATGAGAAAAAAGTAGCTCAATCATTTGCTTCCTCTTTTCCATATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATACACTCTGAATATCCCATATCAGTTTTCGATGGCACATCTTCCCAATTGCAAGATAAAAATTATTCTTCATAATTTGAAAGGAGAACACTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACTCTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAGCATAAAGGTTGGAGATATCTGTATTTTTGAACTTGTGCATGAGTGTGAATTACGTGTTCGCATTGCTGGGGTTGGAAAAGATGGACTAGACTGCCAGGTTGGAAAAGTAGCCATTAGTAGTAAACCTAGTCCAGGACATGCTGTAACTTCCAGATATATGCCAATGAATCCTAAAGTTGGCTCAAAATGCATAAGAAAAGTTGATCTATCGGATAAAAGGTGGTCAAAGATTGGTCAAGAAACTGTTTTGTCCGTTGACCTAAAGAAATCTGGTAGAGCTTCAAATACTTCTAAGAAGATGGGGCTTTGCTCTCAGTCAAAAGCTGCCCATAAAAAGTTGGGTGTCCAGAGGAGACATCGTGTTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCTTTTACTTCTCCTTTTCCTAGTTTTGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCTGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGAAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCAGAACAGTTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGAGACACATGCATTTTTGAACTCGTTGCTCAATGCGAGATGCAGGTTTACATATCTGGGGTTGGAAAGGAAGGGCTTGACCATCAAAATGGGCATTTAAAACTTAATAGATTAGCTAACATTCCATCTACCTGCTAA 1815 0.3967 MGCDYGGKLNVRRPHFYVVYSSSFSSHRLKIPDGFVCHMEGRTYGSVSLIGPSGNAWTVQLIKQDNDLFFHHGWSTFVVDHRLECGDLLVFRYEGHLHFTVQVFDTDACEKETAFLSECSQSSCDFDNIKGQKRDTRESSLDAVVEGGVPKKMRGGTNENQELELGIVGKELSLYEVVRPISMVRENEETFKACSANDGPIPFHMENRNEHEGTKAAILYRSGKEDYHYILNGVSLSNVSAAQDEKKVAQSFASSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNSIKVGDICIFELVHECELRVRIAGVGKDGLDCQVGKVAISSKPSPGHAVTSRYMPMNPKVGSKCIRKVDLSDKRWSKIGQETVLSVDLKKSGRASNTSKKMGLCSQSKAAHKKLGVQRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQNGHLKLNRLANIPSTC 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1936g00001 604 SUPERFAMILY DNA-binding pseudobarrel domain 478 579 IPR015300 -
Mupr1936g00001 604 CDD B3_DNA 27 105 IPR003340 GO:0003677
Mupr1936g00001 604 SMART B3_2 485 581 IPR003340 GO:0003677
Mupr1936g00001 604 SMART B3_2 259 355 IPR003340 GO:0003677
Mupr1936g00001 604 SMART B3_2 16 107 IPR003340 GO:0003677
Mupr1936g00001 604 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Mupr1936g00001 604 Gene3D - 8 109 IPR015300 -
Mupr1936g00001 604 ProSiteProfiles B3 DNA-binding domain profile. 485 581 IPR003340 GO:0003677
Mupr1936g00001 604 CDD B3_DNA 483 577 IPR003340 GO:0003677
Mupr1936g00001 604 Gene3D - 470 580 IPR015300 -
Mupr1936g00001 604 Gene3D - 240 354 IPR015300 -
Mupr1936g00001 604 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Mupr1936g00001 604 CDD B3_DNA 257 351 IPR003340 GO:0003677
Mupr1936g00001 604 Pfam B3 DNA binding domain 20 106 IPR003340 GO:0003677
Mupr1936g00001 604 Pfam B3 DNA binding domain 259 350 IPR003340 GO:0003677
Mupr1936g00001 604 Pfam B3 DNA binding domain 485 572 IPR003340 GO:0003677
Mupr1936g00001 604 ProSiteProfiles B3 DNA-binding domain profile. 259 355 IPR003340 GO:0003677
Mupr1936g00001 604 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 24 357 IPR044837 -
Mupr1936g00001 604 SUPERFAMILY DNA-binding pseudobarrel domain 253 353 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1936g00001 13 365 B3 DNA Binding Superfamily AT3G18990 23.720 1.06e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr1936g00001 B3 4.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1936g00001 - - gmx:100814386 1061.98