Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1890g00005 AAACAAGGCTCTACCCGTTTTCTTGCTCCAGCATTTTCTTCTTCTTCTTCATCATCATCATTGTCATCACTTACAATGGAGATCAAGACTAGAGAAGAGAGGATGCAAGTGTCAATTGAGAAGGTGAGGAGACACGGCACGGTTGAAGTAGAAGATAATGAAGAAGAGGAGGAGGATGAAAGTGTGGCTGGTGGTGAGGGTGGTCTTGCAGAAGATGAGAGGAAGAAAGGTGGTGGAGGGAGTTGGAAAAGAGGGTCAAGTGGGGGTGGAGGAGTTTCTCCACCTTCTTGTCAGGCAGAGATGTGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCCTCATTCCAAGGCACCTTTTGTCATCGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCAGACACAACCAGCGCCGCCGGAAAAGCAATGCTGAAACTTGCAATGAAGGATGCAGTAGCAGTAAAGGGCAGCACCCTACAGAAAGCCACTGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGGTTATAACTCCTTTCATATC 651 0.4839 KQGSTRFLAPAFSSSSSSSSLSSLTMEIKTREERMQVSIEKVRRHGTVEVEDNEEEEEDESVAGGEGGLAEDERKKGGGGSWKRGSSGGGGVSPPSCQAEMCGADLTVAKRYHRRHKVCEPHSKAPFVIVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNQRRRKSNAETCNEGCSSSKGQHPTESHCRNADDWGRIQMNMARNSGYNSFHI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1890g00005 217 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Mupr1890g00005 217 MobiDBLite consensus disorder prediction 51 66 - -
Mupr1890g00005 217 Pfam SBP domain 97 170 IPR004333 GO:0003677
Mupr1890g00005 217 FunFam Squamosa promoter-binding-like protein 14 89 158 - -
Mupr1890g00005 217 MobiDBLite consensus disorder prediction 1 96 - -
Mupr1890g00005 217 Gene3D - 88 158 IPR036893 GO:0003677|GO:0005634
Mupr1890g00005 217 SUPERFAMILY SBT domain 95 175 IPR036893 GO:0003677|GO:0005634
Mupr1890g00005 217 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 180 IPR044817 GO:0003677
Mupr1890g00005 217 MobiDBLite consensus disorder prediction 1 26 - -
Mupr1890g00005 217 MobiDBLite consensus disorder prediction 27 50 - -
Mupr1890g00005 217 MobiDBLite consensus disorder prediction 175 189 - -
Mupr1890g00005 217 MobiDBLite consensus disorder prediction 172 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1890g00005 Mupr-Chr1890 27643 28873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1890g00005 33 186 SBP-box Gene Family AT3G60030 48.101 3.19e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mupr1890g00005 SBP 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1890g00005 - - gmx:100305703 291.967