Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr188g00005 ATGTCGAAAGAACTCTTTGTTGAAGGTGTTGAGAGTAGAAAGCTCAAGCGTAAGATTGAGGAGACATCTTCCACTTGTGTCATAGATTCAGAGTTGTCATTATCTTTGAGTCTTCATAATAACAAAATGGTTGGTGAATCCTCATCCTGCAAATCATTAAAAAGCCATAAGAATTCACCAAGTTTTGCTCCAAAACTTGTGAAAAATACTAATCATCAAGTGATTGTGCCTAAGCAACACGAATTTCCTTGCAAGTTTTGCAACAAGAAATTCCCAAGTTCTCAAGCTCTAGGGGGACACCAAAATGCTCATAGGCGTGAAAGAGTGCTCTCAAGGATGGATAGAGATTTTAATATGGGAAATTTTGGACTTGGTGCTCATATGTGCCCATACTCAACCATGGCACATCATCATCCCTTCCGTGGCCCAATACCACTTTGTTATGGGACTAACATGCACTCCATGGCTCACATATCAACCATGCCATGGCGTCATTTTATACCAGGCTATGGTAACCAAGGGTTAAACAACACATCCATCTCAGGACAACGATTTAGGATGACTAACCCTTGGGGTGTAGCTGTGGAGACTCCACAAAATGTATATCATAGGGATGTGGGATTTGGTTCTGAACATAATTTGGTTCCTTCACTTGATGTAGTTAATAGAGCTACCACTGCTCATTCTAGTCTTAATGACCTTTTGGGAAATCAGTATACTAGGAACCACCTTTGGAAGGGTGATGAAGGCGCGCCTGATCCTACCACGTGGAGCTACGCCAGCCTCCTGATTAAGTTTGTTAGCCTTCCACTTATTGTCTAA 822 0.4173 MSKELFVEGVESRKLKRKIEETSSTCVIDSELSLSLSLHNNKMVGESSSCKSLKSHKNSPSFAPKLVKNTNHQVIVPKQHEFPCKFCNKKFPSSQALGGHQNAHRRERVLSRMDRDFNMGNFGLGAHMCPYSTMAHHHPFRGPIPLCYGTNMHSMAHISTMPWRHFIPGYGNQGLNNTSISGQRFRMTNPWGVAVETPQNVYHRDVGFGSEHNLVPSLDVVNRATTAHSSLNDLLGNQYTRNHLWKGDEGAPDPTTWSYASLLIKFVSLPLIV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr188g00005 273 Gene3D Classic Zinc Finger 55 119 - -
Mupr188g00005 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Mupr188g00005 273 Pfam C2H2-type zinc finger 82 107 - -
Mupr188g00005 273 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Mupr188g00005 273 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 190 IPR044246 GO:0009788
Mupr188g00005 273 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr188g00005 Mupr-Chr188 24587 26896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr188g00005 45 146 C2H2 Transcription Factor Family AT1G24625 38.983 7.99e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr188g00005 zf-C2H2_6 6.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr188g00005 - - gmx:102663144 341.658