Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1878g00007 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATCACGCTTGAGGTGGAGTCAAGCGACACCATTGATAATGTGAAAGCTAAAATTCAGGACAAAGAAGGGATTCCTCCGGACCAGCAAAGGTTGATCTTCGCTGGGAAACAGCTGGAGGATGGCCGTACCCTTGCCGATTATAACATTCAGAAAGAGTCAACATTGCATCTTGTTTTAAGGCTTCGCGGTGGTATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATACAACCAGGATAAGACTATCTGCCGCAAGTGTTATGCCCGTTTACACCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGGCCAAAGAAGAAGATCAAGTAAACTGTTCTGATTTCAAGAAGGAATTGTGTTATGGATTACTGGATGTC 429 0.4569 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQAKEEDQVNCSDFKKELCYGLLDV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1878g00007 143 SUPERFAMILY Zn-binding ribosomal proteins 76 119 IPR011332 GO:0006412
Mupr1878g00007 143 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Mupr1878g00007 143 Gene3D - 80 128 IPR038587 -
Mupr1878g00007 143 SMART ubq_7 1 72 IPR000626 GO:0005515
Mupr1878g00007 143 PRINTS Ubiquitin signature 32 52 IPR019956 -
Mupr1878g00007 143 PRINTS Ubiquitin signature 53 74 IPR019956 -
Mupr1878g00007 143 PRINTS Ubiquitin signature 11 31 IPR019956 -
Mupr1878g00007 143 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Mupr1878g00007 143 CDD Ubl_ubiquitin 1 76 - -
Mupr1878g00007 143 FunFam ubiquitin-60S ribosomal protein L40 79 129 - -
Mupr1878g00007 143 SMART Ribosomal_L40e_3 77 126 IPR001975 GO:0003735|GO:0005840|GO:0006412
Mupr1878g00007 143 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mupr1878g00007 143 Gene3D - 1 79 - -
Mupr1878g00007 143 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mupr1878g00007 143 Pfam Ribosomal L40e family 78 122 IPR001975 GO:0003735|GO:0005840|GO:0006412
Mupr1878g00007 143 PANTHER UBIQUITIN 1 92 - -
Mupr1878g00007 143 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1878g00007 Mupr-Chr1878 78275 81583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1878g00007 1 127 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 92.913 2.25e-86 246