Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1872g00006 ATGAAGGAAACGGAGAAGAGTTTGGATCCGCAGCTGTGGCACGCGTGTGCCGGCGGCATGGTTCAGATGCCGGCGGTGAACTCCAAGGTGTTTTACTTTCCGCAAGGTCACGCGGAACACGCGCACTCCAGCGTCGATTTCGGAGCCTCTTCCACGATTCGGATTCCGCCGCTCATTCTGTGCCGCGTGGCAGCTGTGAAATTCCTCGCCGACCCCGAAACCGACGAGGTCTTCGCCCGGCTCAGGCTGGTTCCTCTCCGGAGCTCCGACCTCGACGGCGAGGATTTTTCCGATGGCGGCGTCTCGGAGGGTTCGGAGAAGCCGGCGTCGTTTGCGAAGACGCTGACTCAGTCGGACGCCAACAACGGCGGGGGGTTCTCGGTGCCGCGGTACTGCGCGGAGACGATATTCCCGCGGCTGGATTACTCGGCGGAGCCACCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCATATTTACCGCGGGACGCCGCGGCGGCACTTGCTGACGACGGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTTGTGGCGGGGGATTCTATTGTGTTTCTTCGGGCCGAGAATGGGGATCTTTGCGTGGGGATTCGTAGGGCCAAGAGAGGGGTGGTTGGTGGGCCCGAGCCGCCGTCTGGGTGGAGCTCTGGTGGGCTTGGGCTTGGGCCTTACGGGGCCTTTTCTGCTTTCTTGAGAGAGGAGAGCAAAGTGGTGAGGAATGGAAATGTGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTACTCTTGCTGCCAGTAATGAAGCTTTTGAGATTGTTTATTACCCTCGAGCCAGTACTCCTGAGTTTTGTATTCGTACTTCTGCTGTTAGGTCTGCTATGAGGATTCAGTGGTGCTCTGGTATGAGGTTTAAGATGCCCTTTGAGACTGAAGATTCTTCCAGGATTAGCTGGTTCATGGGGACCATCGCTTCTGTTCAGGTTCTTGATCCTATCCGTTGGCCTAATTCCCCTTGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTACATAATGTGAAGCGTGTAAGCCCGTGGTTGGTTGAGTTGGTGTCAAACGTGCCAATCATCCATCTGGCACCCTTCTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCGGAGTTTCCCCTTGAAGTTCAGTTTCCAATACCAACATTTTCGGGCAACCCCCTTGGGTCTAGCACTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGTCAGATCTCCACCTTAACCATAAGCTGCAGTTGGGGTTGCTTCCAACTAACGTTCGCCAGCTTGATTTTCACACTGGGATTCCTAATGGCAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCATGCTTGCTGACCATGGGAAATTCACCCAAGAGTCTGGAGAAATCTGATCATGTCAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATTACTAGAAGGTCTTCTAGTGATCTGTTGTCTCAAAATTGCACCACAACGGATGATGAGAATAAGGAGAAGGAAAAGGAGAAGGAGAAGGGGTTTCTTAGTGACTCCCAGTCTTCAGTTTCACCAGGAAAGTCTTCTTCTACCGCCGAGTTCTCTTGGCAACTTGGTTTGGATACAAGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGACGGACCCTTGACTTGTCCTGTCTTGGTTCTTATGAAGAGTTGTACATGAGACTTTCCAACATGTTTGGAATTGAACGGTCTGAGATGTTGAGTCATGTTCTCTACCGTGACACGACCGGTGCTCTTAAGCAAACTGGAGAAGAACCCTTCAGTGAGTTCATGAAGACGGCAAAAAGATTGACAATTCTGATGGATTCAAGCAGCAAAGATAGTAGAAGGGTTTGGATCACAGGAACTCGAAATGCTGAACATGGATTGGATGCTGCATCAAATAAGACAGGTCCTCTGAAGGCTGAATATGAACAGAACATTCAATCAATATTGATTTGGTTTCGAGTACAGTCTGGTCAGTGTGAGTACACAGGAAAATTGTGGTCATCAGTTCAACCCACGCTCTGCCATTTGTTGGTGACA 2202 0.5104 MKETEKSLDPQLWHACAGGMVQMPAVNSKVFYFPQGHAEHAHSSVDFGASSTIRIPPLILCRVAAVKFLADPETDEVFARLRLVPLRSSDLDGEDFSDGGVSEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGVVGGPEPPSGWSSGGLGLGPYGAFSAFLREESKVVRNGNVRPKVSGESVREAITLAASNEAFEIVYYPRASTPEFCIRTSAVRSAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPIIHLAPFSPPRKKLRFPQHPEFPLEVQFPIPTFSGNPLGSSTSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNHKLQLGLLPTNVRQLDFHTGIPNGNITNHGKSKESLSCLLTMGNSPKSLEKSDHVKRHQFLLFGQPILTEQQITRRSSSDLLSQNCTTTDDENKEKEKEKEKGFLSDSQSSVSPGKSSSTAEFSWQLGLDTSHCKVFMESEDVGRTLDLSCLGSYEELYMRLSNMFGIERSEMLSHVLYRDTTGALKQTGEEPFSEFMKTAKRLTILMDSSSKDSRRVWITGTRNAEHGLDAASNKTGPLKAEYEQNIQSILIWFRVQSGQCEYTGKLWSSVQPTLCHLLVT 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1872g00006 734 FunFam Auxin response factor 305 378 - -
Mupr1872g00006 734 ProSiteProfiles PB1 domain profile. 583 663 IPR000270 GO:0005515
Mupr1872g00006 734 SUPERFAMILY DNA-binding pseudobarrel domain 105 213 IPR015300 -
Mupr1872g00006 734 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Mupr1872g00006 734 MobiDBLite consensus disorder prediction 526 569 - -
Mupr1872g00006 734 Pfam Auxin response factor 267 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mupr1872g00006 734 Gene3D - 581 667 - -
Mupr1872g00006 734 MobiDBLite consensus disorder prediction 526 540 - -
Mupr1872g00006 734 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 662 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mupr1872g00006 734 SMART B3_2 111 213 IPR003340 GO:0003677
Mupr1872g00006 734 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Mupr1872g00006 734 Gene3D - 109 213 IPR015300 -
Mupr1872g00006 734 CDD B3_DNA 110 211 IPR003340 GO:0003677
Mupr1872g00006 734 FunFam Auxin response factor 109 213 - -
Mupr1872g00006 734 Gene3D - 305 377 - -
Mupr1872g00006 734 MobiDBLite consensus disorder prediction 541 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1872g00006 Mupr-Chr1872 48420 51278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1872g00006 4 665 B3 DNA Binding Superfamily AT4G30080 59.823 0.0 767
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mupr1872g00006 B3 4.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1872g00006 - - gmx:100778135 1182.93