Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr186g00005 ATGGTATTGTTCATGTCGAAGAAGTCGTTGGTGGCTGGAATTGTTGCTGGAAAATATGACAGTCACCAGAATGGTTGCGGGAAAATGAGTCACCAGAATGCTCGCCAAAAATATGGCAGCTTTGAGAAAGTGTATTGTTTGGAGCACAGAAGTTATATTAAACATCGGTGTACAAAAGCTGACAAGCAAGATGTCACTGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAACCATGTCAACACCGAGTGCGACCCATCGAATTACGAGAAAGTCACGAAAAAGAAAAAATGCCCTGTCCCTGGATGCAGAGAGATATTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCACGGTAGACCATTGTTTAAAGCATCGGTTTGGACCTGATCATAAATGTCCTGGTCCCAAAAATGTGGAAACAGGTTTTTCATTCATGAGTCTCTTGAATGGGAGTAAAAAAGTGGAGTCCAAACCCAAGTCAAGTTCAACCGCATCATCCAAATGGACTACAAGCTTTCTTAATGCAGCTTCTAACATTCGTGCTTCGGCTGAGGCTGGTGTGTCAAAGTTGAGTGGTGAAATTAACCAAGCATGGCAGACGACAACAGGTGGGGTGGGACAGAGCCGTAGCAGTGGTCAAGTGGAACAATGCCCTCAGTGTGGTGCCAAATTCTCCTCGGTTACTATGTTGGTGGACCATGTGCAGAAAGTTCATGAAAGGAGTGGCAACCGCACTGGAGCAAAGGTTACAATTGATGTTTGCCCTAAGTGTAGTAGAGGATTTCGAGATCCTGTGTCCCTTGTGGAGCATGTTGAGAGGGATCATGCTTTGGGCAAGGCCAGTCCTGCAGGAATTGCAAATTTGGCAGTAATTTGCAAGCTAAATTCAAGCAATAGTAGTGCTTTTAGTTTTGCTGACTAA 966 0.442 MVLFMSKKSLVAGIVAGKYDSHQNGCGKMSHQNARQKYGSFEKVYCLEHRSYIKHRCTKADKQDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCREILVFSNTIKCRDCTVDHCLKHRFGPDHKCPGPKNVETGFSFMSLLNGSKKVESKPKSSSTASSKWTTSFLNAASNIRASAEAGVSKLSGEINQAWQTTTGGVGQSRSSGQVEQCPQCGAKFSSVTMLVDHVQKVHERSGNRTGAKVTIDVCPKCSRGFRDPVSLVEHVERDHALGKASPAGIANLAVICKLNSSNSSAFSFAD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr186g00005 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 258 IPR013087 -
Mupr186g00005 321 Gene3D Classic Zinc Finger 203 291 - -
Mupr186g00005 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 295 IPR013087 -
Mupr186g00005 321 SMART c2h2final6 267 290 IPR013087 -
Mupr186g00005 321 SMART c2h2final6 230 253 IPR013087 -
Mupr186g00005 321 Pfam zinc-finger C2H2-type 231 253 IPR041697 -
Mupr186g00005 321 ProSitePatterns Zinc finger C2H2 type domain signature. 232 253 IPR013087 -
Mupr186g00005 321 Gene3D - 96 182 IPR035896 -
Mupr186g00005 321 Pfam AN1-like Zinc finger 111 150 IPR000058 GO:0008270
Mupr186g00005 321 ProSiteProfiles Zinc finger AN1-type profile. 105 155 IPR000058 GO:0008270
Mupr186g00005 321 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 42 259 - -
Mupr186g00005 321 SUPERFAMILY AN1-like Zinc finger 103 151 IPR035896 -
Mupr186g00005 321 ProSitePatterns Zinc finger C2H2 type domain signature. 269 290 IPR013087 -
Mupr186g00005 321 Pfam Zinc finger, C2H2 type 268 290 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr186g00005 Mupr-Chr186 5354 7351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr186g00005 43 290 C2H2 Transcription Factor Family AT2G41835 60.800 1.35e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr186g00005 zf-AN1 5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr186g00005 - - gmx:100786272 451.44