Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1864g00002 ATGGAGTGGAATGCAAAATCTCCCCCACAGTGGGAGTGGGAGCACCTATTCTTCAATACAAAGCCAACAGAAAATTCAAAATCACAATCACCGAACTGGAGTGGTGAAGCAAACCAAGAAATCAATTTTGAGTTGTTTGATGCATCTGGTGTCAGTGGTTGTTCTGGGTCAGAGCTAATACATGCTTCTTCATCGAGGACCTCAATATCAGCCTCTATGAATTCATCGTCAAATATGGGTAGCAAAACATCTATATTCACTTTTGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAATTATCTAAAGAAGAGCCACTAGAAACTTCTCATGCACCAGAGCCCTCTTCTGTATCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAGCGGTTGTACTTTGAGGATGTTTGCCCAGAAAATGATTCCAAGAACCTATCTTTCTCGAAGGATCCCGTGTCATCTTCAAGTACTGGAAAGAAATGCAAGTCAAACAATGGTCAGAGCTTACAATATCCATGTTGCCAGGTTGAAGGCTGTGGCCTTGACCTTTCATCAGCTAAAGATTACCACCGCAAACATAGAGTCTGTGAAAGCCATTCCAAATCCCTTAAAGTGGTTGTAGCTGGTTTGGAACGTCGATTCTGCCAGCAATGTAGCAGGTTCCATGGTCTGTTAGAGTTTGATGAAAAAAAGAGAAGCTGCAGACGACGTCTTTCTGATCACAATGCAAGGCGCCGTAAACCTCTTCCTGAAGCTGTCCAATCAAGTCAATCAGCTTTGTCTTCAGTACCCTGTGAGAGGAGGAAACAGATGAGTCCATTTACTTTTTCTAGGACTGCTTCAAATATAGCCTGTCAAAAAATACACAGCAGCAAGCTTCCCCAGACAAAAGATTTTCTCATGAAGACTGCCAAGGCCAATACTGTGATACCAAGTATTGTCACTATGCTCTCCAATGATTCCAACATCAGTTTCACGTCAAAAGCCTTTGCAACCAAGAATATTAACCTAGGTAGAATTCCTCTTGTAGGTATAGAAGATTCCATTAACTCCTCTGATCCAAATGCTACAAAAGATTATGACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTTCATACGATGCTAAATCCATTTCTCTAGAACACTCCAATCACACAACCAGTGTTGCTCAGCCAACGAGTCAGCGCATACCTCTTGCTTCATCAGAATATTGGCATACTGATCATCCACTCAATTCCAGCATGTGGATCTCCTACTCAAATAGTGATGACAGTAATCGCTTTCACGAATTTCAACTGCTCAGAGAACCTTATGAATCTGGTTTATCTTATGCAAGCATCCCTATATGCCAAGGCCAAGACTATTTTGAGAATGTGTTGCGTAGACAAAATGATAAATGA 1410 0.417 MEWNAKSPPQWEWEHLFFNTKPTENSKSQSPNWSGEANQEINFELFDASGVSGCSGSELIHASSSRTSISASMNSSSNMGSKTSIFTFESSQDDSSGKKELSKEEPLETSHAPEPSSVSGEPLLTLKLGKRLYFEDVCPENDSKNLSFSKDPVSSSSTGKKCKSNNGQSLQYPCCQVEGCGLDLSSAKDYHRKHRVCESHSKSLKVVVAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPLPEAVQSSQSALSSVPCERRKQMSPFTFSRTASNIACQKIHSSKLPQTKDFLMKTAKANTVIPSIVTMLSNDSNISFTSKAFATKNINLGRIPLVGIEDSINSSDPNATKDYDRALSLLSTNSWGSYDAKSISLEHSNHTTSVAQPTSQRIPLASSEYWHTDHPLNSSMWISYSNSDDSNRFHEFQLLREPYESGLSYASIPICQGQDYFENVLRRQNDK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1864g00002 469 SUPERFAMILY SBT domain 173 253 IPR036893 GO:0003677|GO:0005634
Mupr1864g00002 469 MobiDBLite consensus disorder prediction 89 121 - -
Mupr1864g00002 469 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 364 IPR044817 GO:0003677
Mupr1864g00002 469 Gene3D - 165 236 IPR036893 GO:0003677|GO:0005634
Mupr1864g00002 469 MobiDBLite consensus disorder prediction 239 267 - -
Mupr1864g00002 469 Pfam SBP domain 175 248 IPR004333 GO:0003677
Mupr1864g00002 469 MobiDBLite consensus disorder prediction 252 266 - -
Mupr1864g00002 469 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Mupr1864g00002 469 MobiDBLite consensus disorder prediction 147 167 - -
Mupr1864g00002 469 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677
Mupr1864g00002 469 MobiDBLite consensus disorder prediction 93 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1864g00002 Mupr-Chr1864 3411 7062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1864g00002 1 413 SBP-box Gene Family AT5G43270 39.070 6.55e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mupr1864g00002 SBP 9.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1864g00002 - - gmx:100781289 508.064