Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1852g00007 ATGGCAGAAGCTGAAGACACTCTTCAAGCCTCGCCTATGGACGAAACCAAGAACAGTAATAAGAAGAATAGGAAGAAGCGCGATAAGAAGAGACCTCGGGATATTGGTAGCGAGGAGCGTCCAGAAGAAGAGGAGAGTGAGAATAAAGCAGATAGCGATGGAGAATCCTCGAAGAAGAAGAAGAAGAAGAAGGTGGAAGGAGAAAGTGAAGTGGAACAGAGAAAGGTGAAGAACAACGGTGGGTCTGGAATTATGAGCACCGAGTCATTTGAATCTCTGGGATTATCCGAACCTACTTATAAGGCCATTTTGGATATGGGATTCCACCACATGACTCAGATTCAAGCGAGAGCAGTTCCGCCACTTTTGATTGGAAAAGATGTTCTTGGAGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTCTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAGTTTACACCTCGAAATGGAGCTGGTGTTGTTGTTATATGCCCAACTAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAGCTAGAAAAGTTGAAGCTGAACGCCTTGCTAAAGGGATAAATCTATTGGTAGCAACTCCTGGTCGTCTTCTAGATCATCTTCAAAATACAAAAGGGTTCATATATAAAAACTTAAAGTGCCTCATGATTGATGAAGCTGACAGGATCTTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACATTCTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTATCATTTCAGACAACTCCTACCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCTAAGCGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCGTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTGAAGTGCGCTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAGCAACATGCTCGGACTACTACGTTCTTCAACTTCTGCAAAGCAGAAAAAGGGATCTTGCTCTGCACTGATGTTGCTGCTCGCGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATTCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTAAAGGCAGCGAAGGTTCCTGTGAAAGAGTATGCATTTGATGATAAGAAGCTTGCAAACGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAACAATATGGCTAAAGATGCATATAGGTCATACATCTTAGCATATAATTCACATTCTATGAAGGATATATTCAATGCTGTTGCTGTTTCATTCTGTTTTACAAACCCACCAAAGGTGAATCTTGACATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTGGAAGGAAAGTGGAGATGA 1641 0.4138 MAEAEDTLQASPMDETKNSNKKNRKKRDKKRPRDIGSEERPEEEESENKADSDGESSKKKKKKKVEGESEVEQRKVKNNGGSGIMSTESFESLGLSEPTYKAILDMGFHHMTQIQARAVPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSARKVEAERLAKGINLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPTYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCAGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDDKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYILAYNSHSMKDIFNAVAVSFCFTNPPKVNLDIDSSASKHRKKIRKVEGKWR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1852g00007 546 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 240 248 IPR000629 -
Mupr1852g00007 546 Pfam Domain of unknown function (DUF4217) 470 523 IPR025313 -
Mupr1852g00007 546 SMART helicmild6 348 429 IPR001650 -
Mupr1852g00007 546 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 294 IPR014001 -
Mupr1852g00007 546 CDD DEADc_DDX18 99 296 IPR044773 GO:0003724|GO:0005524
Mupr1852g00007 546 Gene3D - 33 298 IPR027417 -
Mupr1852g00007 546 SMART ultradead3 107 312 IPR014001 -
Mupr1852g00007 546 MobiDBLite consensus disorder prediction 51 75 - -
Mupr1852g00007 546 Gene3D - 305 537 IPR027417 -
Mupr1852g00007 546 SMART DUF4217_3 469 525 IPR025313 -
Mupr1852g00007 546 PANTHER RNA HELICASE 39 469 - -
Mupr1852g00007 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 450 IPR027417 -
Mupr1852g00007 546 CDD SF2_C_DEAD 309 439 - -
Mupr1852g00007 546 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 88 116 IPR014014 GO:0003724
Mupr1852g00007 546 Pfam Helicase conserved C-terminal domain 324 428 IPR001650 -
Mupr1852g00007 546 MobiDBLite consensus disorder prediction 1 89 - -
Mupr1852g00007 546 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 478 IPR001650 -
Mupr1852g00007 546 FunFam RNA helicase 305 528 - -
Mupr1852g00007 546 Pfam DEAD/DEAH box helicase 112 283 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1852g00007 Mupr-Chr1852 41631 47856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1852g00007 88 447 Eukaryotic Initiation Factors Gene Family AT3G13920 30.769 9.39e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1852g00007 K13179 - gmx:100797375 905.59