Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr18475g00001 ATGGACACCCAACTTGACTACAAGACTAAAACACCAAACCCCACTTCCCCAACGGGCTTGAAGCTCTTCGGGTTCAGCGTACACCACGAAGACATCATGGAAGAAGACGAGGTGGTGATGCATGATGACGTGGCTGACTCAACCACCAAGGCCACTTCCCCTTCCACTTCCACTTCTCCATCCGGCTCGCCGGACTCCGCCGGCGCCGGTGCCGGACCTCCTTCCTCCGGCGACCGGAAATACGAGTGCCAATACTGTTGCCGAGAGTTTGCAAATTCACAAGCACTTGGTGGGCACCAGAACGCGCACAAGAAAGAGCGTCAACAGCTCAAGCGTGCGCAGTTACAGGCCACGCGAAACGCCGCCGTTTCGTTCGTGCGGAACCCGATGATCTCCGCCTTCGCCCCTCCGCCGCACCTGCTGGCTCCGCCGGGGTCCGTGGTGGTCCCGGCGGCCCCGCCCTCGTGGGTGTACCTGCCGCCACGTGCCGCGCCTCCTCCCTTCCACGTGTCAGTGTCTCACGGGTGTGCGTTCCCGTCGGCGCATAGCAATGGGTTGAGCAGTAGTAATAGTAATAGCAACATCACCATAACGGGTGTGAAATCAGCGGGTGCAGGGATGTTTCCCTATGTTGGCGTCGTAGGAGATTCGTCATTAGCTTTGTCAACGGTGCAGGTTCAGGCCCGGGCCCACCATGCTAGGATTGATGGGCCCTCTTTGAGTAGGTTCTCCAAAGGAGATGGTGGGCCCAAATTTGATGATACATGGGGCTTGGACTTGCATCTTAGCCTCGCACCAGCTGCGCCGTGA 810 0.5877 MDTQLDYKTKTPNPTSPTGLKLFGFSVHHEDIMEEDEVVMHDDVADSTTKATSPSTSTSPSGSPDSAGAGAGPPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPMISAFAPPPHLLAPPGSVVVPAAPPSWVYLPPRAAPPPFHVSVSHGCAFPSAHSNGLSSSNSNSNITITGVKSAGAGMFPYVGVVGDSSLALSTVQVQARAHHARIDGPSLSRFSKGDGGPKFDDTWGLDLHLSLAPAAP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr18475g00001 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Mupr18475g00001 269 Gene3D Classic Zinc Finger 70 128 - -
Mupr18475g00001 269 MobiDBLite consensus disorder prediction 1 20 - -
Mupr18475g00001 269 MobiDBLite consensus disorder prediction 1 22 - -
Mupr18475g00001 269 SUPERFAMILY beta-beta-alpha zinc fingers 77 108 IPR036236 -
Mupr18475g00001 269 PANTHER ZINC FINGER PROTEIN 5 13 268 IPR044299 GO:0010090
Mupr18475g00001 269 MobiDBLite consensus disorder prediction 34 76 - -
Mupr18475g00001 269 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Mupr18475g00001 269 MobiDBLite consensus disorder prediction 46 65 - -
Mupr18475g00001 269 FunFam Zinc finger protein GIS3 69 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr18475g00001 Mupr-Chr18475 3808 4617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr18475g00001 4 267 C2H2 Transcription Factor Family AT1G68360 44.086 4.42e-52 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr18475g00001 - - gmx:100811796 406.371