Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1839g00007 ATGAAGATGCTGTCTCCGAGATTCTTCGCTCTCACCATTCTGCTCGCGGCGCTGCTTTCACCTACCGCCAACGCACTCAATGCCAATGAGATGCACAAACAGAAACCCGCCGAATCAAGGGACGTGGTTGAAGAAGAGAAGCTGCTGATGCAAAGCTTGAAGAATTCGTCAATGGCAGAAAGGTCAAGGAGTGCTTTGAATGAGCATGCTGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGATGAGAGCATACGCAATTACACGGCGAGAAGGAATCTGGATTTTTTCTCATGTGGGAGCGGGAATCCAATCGACGACTGCTGGCGATGCGACAAGCGTTGGTACCTCCGGCGAAAGCGGTTGGCTAACTGCGGCATCGGTTTCGGCCGCAACGCTATCGGCGGGCGCGACGGAAGGTACTACGTGGTATCGGACCCCGGCGACGACGACCCGGTGAACCCAAAACCAGGCACGCTCCGGCACGCCGTGATCCAAGACCGGCCTCTGTGGATCGTTTTCAAGAGGGACATGGTGATCACCCTGAAGCAAGAGCTGATCATGAACAGCTTCAAGACCATCGACGGTCGCGGCGCCAACGTTCACATCGCGTACGGTGCCTGCATCACCATCCAGTTCATCACCAACGTCATCATCCACGGCCTCCACATCCACGACTGCAAGCAGACCGGGAACGCCATGGTTCGCAGCTCCCCCTCCCACTATGGATGGAGGACCCTCGCTGACGGCGACGGCATCTCCATCTTCGGTTCCAGTCACATTTGGCTTGACCACAACTCTCTCTCCAATTGCGCTGATGGCCTTATTGATGCCATTATGGGCTCCACTTCCATTACCATTTCCAACAACTACTTCACCCACCACAACGAGGTTATGCTACTGGGTCACAGTGACTCTTATGTCCGTGACAAGCAGATGCAAGTAACCATTGCTTACAACCATTTCGGGGAGGGTCTTATCCAAAGAATGCCCAGGTGCAGACATGGATATTTTCACGTGGTTAACAATGACTATACCCACTGGGAAATGTACGCAATTGGCGGCAGTGCTGAGCCCACAATTAACAGCCAGGGCAACAGATACCTTGCTCCTCTGAACCCTTTTGCCAAAGAGGTGACAAAGAGAGTGGATACAGGGGAATCCATATGGAGAAGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTGAATGGAGCCTTTTTCACTTCGTCGGGAGCAGGGGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAGTCATCTTCTTTGGTTGGTACCATCACCTCTGGAGCTGGTGTTCTTACCTGTCAGAGGGGTGCCATGTGTTAA 1356 0.5295 MKMLSPRFFALTILLAALLSPTANALNANEMHKQKPAESRDVVEEEKLLMQSLKNSSMAERSRSALNEHAVDNPEEIASMVDESIRNYTARRNLDFFSCGSGNPIDDCWRCDKRWYLRRKRLANCGIGFGRNAIGGRDGRYYVVSDPGDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWLDHNSLSNCADGLIDAIMGSTSITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPLNPFAKEVTKRVDTGESIWRSWNWRSEGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTITSGAGVLTCQRGAMC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1839g00007 451 FunFam Pectate lyase 102 444 - -
Mupr1839g00007 451 PANTHER PECTATE LYASE 18-RELATED 65 448 IPR045032 GO:0030570
Mupr1839g00007 451 Pfam Pectate lyase 185 366 IPR002022 -
Mupr1839g00007 451 Gene3D - 102 444 IPR012334 -
Mupr1839g00007 451 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Mupr1839g00007 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Mupr1839g00007 451 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Mupr1839g00007 451 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Mupr1839g00007 451 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Mupr1839g00007 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Mupr1839g00007 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Mupr1839g00007 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Mupr1839g00007 451 SMART amb_all 177 374 IPR002022 -
Mupr1839g00007 451 SUPERFAMILY Pectin lyase-like 80 445 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1839g00007 Mupr-Chr1839 73166 78648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1839g00007 39 451 Polysaccharide Lyase AT4G13710 76.247 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1839g00007 K01728 - gmx:100809277 840.491