Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1834g00007 ATGGCGTCTAAAGGTCCCAGGTCTAAGATTGATCACGAGAGCAGAGCTAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAACTCAGGCAAAGAAAGTCGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGGTACTCAACAATGTTGGCAGAAAATCTTGTGGATCCTTATAAATCTGCAGAGAATAATTCTGCAGAGCGTCAGATGAGTATTCAAAGCAAAGATGTACATGGAGATATTGTTAATGAACCCAAGGAAGCTGCTGTTGTAGAGTATCAATCAGATGCAGCTGATAATGATGAAGAATATGATTTACAATCTGATGATGAATCGGAGGATGATGAGCAAACAATTGAGCAAGATGAAGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGAAGCTTTGCGTGATGAAATGGATCTTCCGATTGAGGAGTTACTCAAACGTTATGGTGGGGAAAAAGGAGAATCTGTAATGACAGAAAGTAGTTCCGAGCATAGTGAGGATGGTGGGAAAATAGTTAGAGCTGGTGATGGTAAGAAAGAACTTGCATCAGAAAACAGAGACGATCTTTTATCTGTCAGCAAAATTGGCACAAGCAATTCCAGCATGGTCCCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACCAACAAACAATGTCTCTCAATACGAGGATGGTCAATCTGAAATTCTAAAAGAGGTTCCCCATGAGAAGGCCAATGAAGATTTGGCATATGATTTTACCGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGATAAGGATGATGAAACAACCTTATCTGAGGAGGAAAAACTGGATAGAGTTTATGCAATTGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGTCCCAAGTGACGATGAAGATGGGGAATATGAGTCTGATTATGCTTCTGCTTTATCAGAGGATCATTCAGATTCTCCAGTCCATGAAGATGCTGGACAGAAGGATCCTGCTGTTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTGCTGTACAGTCCCAGGCAGAAGAACAGTGGGAATCGTCTCATGAAAATTTGGAAAAAAGAGAAAGTGAACATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCCACTGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTGCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTCAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACCATAGCTTTGCTTGCACATCTTGCTTGTGACAAAGGGATTTGGGGCCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGTAAACTTAAAAGACAAGGATGGTTAAAGCCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTCATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCCTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGGATTCTCTTGACTGGTACACCACTACAGAATGATCTCATGGAACTATGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGAATGGTAGAGGGAGAAGAAAAAGTTAATAAAGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGGTTAAAGCGAGATGTGGAGAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGAAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGAATTGATAATCAGTTAAGTTCTTCAGTTTGCTCCATGCTCTTGCCTAGTCCCTTTTCAATGGTGGACCTAAGAGGTTTGGGTCTTTTGTTCACTCATCTTGACTATAGCATGACTGCTTGGGAAAGTGATGAAGTACAAGCTATTGAGACCCCTGCGACTTTGATCATGGAACGTAGTGATAAAGCTGACCTAGAAGTAATTAGGCCTGGACTGAAATGCCAAAAGAAGTTGCAAGGAACAAACATTTTTGAAGAGATCCAAAGGGCAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGCGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCCATCTACTCAACAACTCTAAGGGATCTTGTTACCTTAAAACATCCTGTATATGATATTCATCAGGTGAAAGCAAACCCAGTTTCGTACTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCGGCTGCACGAGCACCCTCTCCTGTTTGCTGGTGCAGTACAAGTGAAACAAATGTGTTTCTGCACCCATCTTACAAGCGGAAATGCTCTGAAGTTCTGTTACCACTACTGTCACCAATCAGGCCTGCAATTGTCCGTCGGCAAGTGTATTTCCCCGATAGGCGCCTTATACAATTTGACTGTGGGAAACTGCAGGAACTAGCAATTTTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGCTATACATACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACTGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGGTGCCACAGAATTGGTCAGACACGCGAAGTGCATATCTATAGATTTATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAACAGAAGCGGGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAGCACTTCCAATAAAAAATATGCCAAAGGAGAAAAATCAGAACAATGGGGAAGTTTCTGTAACTAATGCAGACGTAGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTATATGGCATTGAAGAGAGTTGAACTGGAAGAGGCGGTGGACAATCAAGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAGGATGATGAGACTGCAGAATTAGGTGAATCTGTTTCGAATATAAATAAAGAGAATGCGTTAATGTTAAATGGAAGTGATAATAAGGAAGATAGACCACCACACACTGTTGCTGTCAAAGAAGATGATGCTGACATGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAGGATGAGTTACGTCCTATTGATCGATATGCCATTCGTTTTTTGGAATTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACTATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAAACAGAAAGAAGCCGAGGAAGAAACTTGTGATTCTAAAAAGACTCAAACACCAGGGGATTCAAAACCCAAATCTAAAAAGAAACCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACCTCTGGCTTGAGATCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGATGAGGATGTCACTGGTCTGGATTTTGTGTCTCCAAATTCAACTGTGCAGAAAAAACGTAAGAAGTCTAAATTAACAACTGATGGTGAAGAAGAAAAGAGATCTAAGAAGTCCAAAAAGTCCAAGTGGGATCCTCCTGACATTTATGCTTCCGATTTAGAATCCAACTCATTAGTTGTGCAGGATGAACATGCAGAATCAAGGACTTGCGAAAGTCTGGTTGACTTGGAACAGAAAACAGCAAGCAGGAGTAAGATGGGAGGAAAAATATCGATCACTCCTATGCCTGTAAAACGGATTTGGATGATAAAACCAGAAAAAATGAAAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTAGTTTATGAATACGGTCCTAACTGGAGTTTGGTTAGCGAAACGCTTTATGGCATGACTGCTGGTGGTTTATACAGGGGGAGATATCGTCATCCTGTTCATTGCTGTGAGAGGTTCAGAGAACTATTCCAGAAGTATGTCGTGTTCTCGATGGACAATGCAAATCATGAGAAGATCAACAGTGGTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGCTGTTAGATGTTGCTTCTGAGCAGGTGGCATCACACGTTGACCGCAGGCAAAATCCATCACCCACCTGTAATGGTCTCTATTTCGATCAGAGTTTCTTTACTTCCATTGGCCAGCCTTCACAAAATTCCTTGAAGAAATCCTCTGAAAGGATGGCATTTGCGAATTTGGCCCAGAGCAAGAAGTTAGTAGCAGCTGCACTTGATGATACCACAACTAGGCAAGAGAATGACAAAGTCATCCTCTCTAAGCAAGGGGACGACATGCCAGTGAGTGCAGATCAGCTGGATATAACTCTGGAATTCCCGAAAGATGAGAGTGATGTCCTATTTTCATTTCCGTCTGTTATAAATTTATCAATACATGGGACCGAACCAATACCATCTTTAAAAAAGCAAACACAAGAAGATGACCTTAAAGTTGGTTTGTCCATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGGGTTTGTGAAGAAGACAGCTCTGGTTGGGCTTCATCTGTATTCCCAACCAACGATGCAAGGTCTCGACCTGGATCCAAGATACAATCCTCTGGAAAACAGAAGTCTTCCGTATCTGACTCTGCTAAGCCTTCCAGGTCAAAGTCCAAAAGAGCTTCAATGGATCCTAGTGAAATGCATCACCAAGCTGATTCCATATTCCAGTCAATGCCACCACTCAAGGATCCGAGATTTGATCTCACCTCATGCACTATGAATGAAGTTGGAATTGATGGCAATTTCCCCTTTAACTTGAATGGGGAAAGTTTATTGGAAATGGAGAGTGTTGGAATGGTCCCACATGATTATGTGGCTGGTTTAATCTCAGACCTTGATGATTGTACAGCATTCCCTGAATATACTGACATTAGATAA 6087 0.412 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLTQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDPYKSAENNSAERQMSIQSKDVHGDIVNEPKEAAVVEYQSDAADNDEEYDLQSDDESEDDEQTIEQDEALITKEERQEELEALRDEMDLPIEELLKRYGGEKGESVMTESSSEHSEDGGKIVRAGDGKKELASENRDDLLSVSKIGTSNSSMVPGRRCDESNGDVATPTNNVSQYEDGQSEILKEVPHEKANEDLAYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLDRVYAIDPKDEIALLQKESDMPVEELLARYKRVPSDDEDGEYESDYASALSEDHSDSPVHEDAGQKDPAVPMDEDIKSGEHLAAVQSQAEEQWESSHENLEKRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDNQLSSSVCSMLLPSPFSMVDLRGLGLLFTHLDYSMTAWESDEVQAIETPATLIMERSDKADLEVIRPGLKCQKKLQGTNIFEEIQRAIWEERLKQAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTLKHPVYDIHQVKANPVSYLYSSKLADIVLSPVERFQKMTDVVESFMFAIPAARAPSPVCWCSTSETNVFLHPSYKRKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRFISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRALPIKNMPKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKRVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGESVSNINKENALMLNGSDNKEDRPPHTVAVKEDDADMLADVKQMAAAAAAAGQAISAFEDELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEAKQKEAEEETCDSKKTQTPGDSKPKSKKKPKKAKFKSLKKGSLTSGLRSVKEESQAEPMNIDDEDVTGLDFVSPNSTVQKKRKKSKLTTDGEEEKRSKKSKKSKWDPPDIYASDLESNSLVVQDEHAESRTCESLVDLEQKTASRSKMGGKISITPMPVKRIWMIKPEKMKKGNHWSKDCIPSADFWLPQEDAILCAVVYEYGPNWSLVSETLYGMTAGGLYRGRYRHPVHCCERFRELFQKYVVFSMDNANHEKINSGGSGKALLKVTEDNIRMLLDVASEQVASHVDRRQNPSPTCNGLYFDQSFFTSIGQPSQNSLKKSSERMAFANLAQSKKLVAAALDDTTTRQENDKVILSKQGDDMPVSADQLDITLEFPKDESDVLFSFPSVINLSIHGTEPIPSLKKQTQEDDLKVGLSIAENRFREAARVCEEDSSGWASSVFPTNDARSRPGSKIQSSGKQKSSVSDSAKPSRSKSKRASMDPSEMHHQADSIFQSMPPLKDPRFDLTSCTMNEVGIDGNFPFNLNGESLLEMESVGMVPHDYVAGLISDLDDCTAFPEYTDIR 2028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 1467 1487 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 290 306 - -
Mupr1834g00007 2028 SMART helicmild6 1091 1174 IPR001650 -
Mupr1834g00007 2028 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Mupr1834g00007 2028 Pfam Helicase conserved C-terminal domain 1064 1174 IPR001650 -
Mupr1834g00007 2028 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1032 1281 - -
Mupr1834g00007 2028 ProSiteProfiles Myb-like domain profile. 1650 1703 IPR001005 -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 1546 1572 - -
Mupr1834g00007 2028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 742 IPR027417 -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 250 326 - -
Mupr1834g00007 2028 Coils Coil 1402 1422 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 1898 1954 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 1 33 - -
Mupr1834g00007 2028 Coils Coil 216 236 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 160 223 - -
Mupr1834g00007 2028 Pfam HSA domain 27 93 IPR014012 -
Mupr1834g00007 2028 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 766 831 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 1467 1574 - -
Mupr1834g00007 2028 FunFam Photoperiod independent early flowering protein 1646 1707 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 353 371 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 353 373 - -
Mupr1834g00007 2028 Gene3D - 489 765 IPR038718 -
Mupr1834g00007 2028 SMART bromneu2 23 94 IPR014012 -
Mupr1834g00007 2028 SMART ultradead3 516 709 IPR014001 -
Mupr1834g00007 2028 Coils Coil 1457 1477 - -
Mupr1834g00007 2028 CDD DEXQc_SRCAP 520 742 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 191 215 - -
Mupr1834g00007 2028 Gene3D - 1646 1707 - -
Mupr1834g00007 2028 CDD SF2_C_SNF 1050 1185 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 1935 1949 - -
Mupr1834g00007 2028 Gene3D - 766 842 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 406 480 - -
Mupr1834g00007 2028 FunFam Photoperiod-independent early flowering 1 490 765 - -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 250 287 - -
Mupr1834g00007 2028 Coils Coil 1278 1298 - -
Mupr1834g00007 2028 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 697 IPR014001 -
Mupr1834g00007 2028 Coils Coil 2024 2028 - -
Mupr1834g00007 2028 PANTHER HELICASE SRCAP-RELATED 15 1928 - -
Mupr1834g00007 2028 Pfam SNF2-related domain 537 809 IPR000330 GO:0005524|GO:0140658
Mupr1834g00007 2028 Gene3D - 1026 1279 IPR027417 -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 424 457 - -
Mupr1834g00007 2028 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Mupr1834g00007 2028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1250 IPR027417 -
Mupr1834g00007 2028 MobiDBLite consensus disorder prediction 1901 1934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1834g00007 Mupr-Chr1834 55446 75588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1834g00007 540 812 RAD5 or RAD16-like Gene Family AT5G43530 30.435 1.20e-28 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr1834g00007 SNF2_N 6.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1834g00007 K11661 - gmx:100794898 3536.5