Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr18345g00001 ATGTGTTGTGTATATAAATATAAAAATACTGATCCCAGATTAATCCAACGACGACCATCAAATCTCACCATCCAAACAGAAAACACACAACCAAACCCTAATCTGAAACGATCGTTCCCTCCCTCTCCATTTCTCTCTCTTCTTTCTCTCTCTATCAACCGTCAATCTCAGGTCTCATATTCCTCTTCTCGCTACCCGATCCAGAACCTTCCAACCCTCTCCTTCGAGATCTCACCTCACGCGCCTCCCACGCTGGACCACGCGCCCGTTACCGCCTCCATCATGGTCGTGAGCGGAGGGAAGGGCTTGAAACGCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTCCCCACGCCGTCCCTCGCCGAGTCGGAAAACTTCGCCGGCGGACCGTTCCGCTCCAACGTCCGATCCTTCCTGACGAAGCACGCGCTGCTTCCGCCGCCGTCTGCGCTCTTTCCGCACCTGCTGACGTGGCAGATCCTCTTCCGCGTCGGCGAGCTCACCGAAGGCCCCGAATCGCCGGTGGTGTGCCTCGACGTCGTGGAGGAGGACGTGGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGTGGCCACCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCCGATGGGAGCTCCATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAATGCAAGTCTTGCAATCATGTGACTACCACTGATGATGTTGAAGATTGGGTGTACCACCAGTTAGAGAACACAACTCATCTTTTACACGGTGTAGTCCATGCCAATGGATATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGTCATATTATGGATTTCTGGGATCGCCTATGCAAGACTCTAGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGCCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACATCCATGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACACACGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCTTCTTTTCCCAGGGACAGATACCCCACTCCCGAGTGCAGGACATGATCTCATATTACCAGTCTTTGTCAGAGCACGAGCTTGTAAATATAAGGGACCTCTTTTGTTTCATGATGGGTTTGATTGGTGATGCTCGCAAGACTGCATCAAATGTTGATGACACAACCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGAGAAGAGTGACATTGAACGTGTGGAGCAAGCCATGGTCAGAGTGCTGCGTGCAGTGTCTGAGTCTAAGTGGGTGTCATGGCGAGCTCTTAGGGGTGTAGCCTCCAAGGTGGGCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCACAAACTGGAGTTTATGAGTTCAGACTCGAGGCTGCAACCGGTGCTTGCTATGGGATTTTAGCGAACAATAATTCTTCAGGCTCGAAGTATCCAACTGAAGAAAACCTCCTACAATGCTTGAGATATTTATATGACTCTTTGCTTCATCCTCAGATGATGGTAAACTATGTTGAAGCAGGGACAAGGGATCTTGCAATGAGCTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAATCCTGAGATGTTGCCATTGTCAGATTTGCACAAGTTACGCATCTCGTGTCAGGTTGAACTTGTAGATGAACCTGAAGATTCAGAAGCTATAACTCCACCAGAATTAATTGTGCTGCCCATGAATGCCACGGTGGCTGAGCTTAAGAATCAAGCAACAAATGCTTTTCAAGATGTATATCTAATGTTCAGAAGATTTCAAGTTGAAGAGCTACTTGGCTATAGCGGTGTTGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTAGTTTGTGTCAGAGGAAGATGCATTGGGAAGAATGGATTGAGCAAGTTCCGAATGGAACGGGGACTTGAAAGGTGGACTGTTGAATGCAGCTGTGGGGCTAAGGATGATGATGGAGAGAGAATGTTGGCGTGTGATATATGTGGAGTGTGGCGGCACACTAGGTGTTCTGACATCCATGATACCGATCCTGTTCCAGCTCGTTTTGTTTGCCTCAAATGCCAAAACTCTGAATCAAAACCCAAAATTAGTGGCCACTGCAAAAATGAGACTGTCACTAACGTTAGTTCTAGTGCTAGTTGCTTCGTCAACGGCCTGCCAGTGCCGTCTGATGTTCGCTAA 2409 0.4786 MCCVYKYKNTDPRLIQRRPSNLTIQTENTQPNPNLKRSFPPSPFLSLLSLSINRQSQVSYSSSRYPIQNLPTLSFEISPHAPPTLDHAPVTASIMVVSGGKGLKRAKKRVTADFYDFLTFPTPSLAESENFAGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQILFRVGELTEGPESPVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTHEAYKSAVESLSNLPLSFFSQGQIPHSRVQDMISYYQSLSEHELVNIRDLFCFMMGLIGDARKTASNVDDTTCKKRRFNASGLSISWEKSDIERVEQAMVRVLRAVSESKWVSWRALRGVASKVGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRLEAATGACYGILANNNSSGSKYPTEENLLQCLRYLYDSLLHPQMMVNYVEAGTRDLAMSSAQKLFDCKQFVKDYNPEMLPLSDLHKLRISCQVELVDEPEDSEAITPPELIVLPMNATVAELKNQATNAFQDVYLMFRRFQVEELLGYSGVDDSTQVKLLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVECSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQNSESKPKISGHCKNETVTNVSSSASCFVNGLPVPSDVR 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr18345g00001 802 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 704 770 IPR013083 -
Mupr18345g00001 802 SMART PHD_3 718 764 IPR001965 -
Mupr18345g00001 802 Pfam PHD-finger 719 765 IPR019787 -
Mupr18345g00001 802 ProSitePatterns Uncharacterized protein family UPF0054 signature. 276 286 IPR020549 -
Mupr18345g00001 802 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 108 777 - -
Mupr18345g00001 802 CDD PHD_MMD1_like 718 763 - -
Mupr18345g00001 802 SUPERFAMILY FYVE/PHD zinc finger 707 766 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr18345g00001 Mupr-Chr18345 1563 6433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr18345g00001 171 763 PHD Transcription Factor Family AT5G22260 31.388 8.97e-89 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr18345g00001 PHD 9.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr18345g00001 K26271 - gmx:100818189 1367.06