Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr18304g00001 ATGGTTCCTTCACTTCAACATGCATTCTCTCATTTACTCACTCTTGTTGCTTCACTTTTAATACTCCTAGTGGTCCCTTCCTCTTGCTTCAACCCCAAAAAGATTGTTAATTCTTCATTTGCTTCACACTCCTCAAATGGTGATAATTGGTCACCTGCTGTGGCCACTTGGTATGGACCTGCCCATGGGGATGGAAGTGAAGGTGGTGCTTGTGGTTATGGCAGTACTGTTGGAGCACCTCCATTCTCATCAATGATATCTGCGGGAAGCCCTCTTTTGTATGAATCAGGCAAAGGCTGTGGTTCCTGTTACGAGGTGAAGTGCACAGGGAATGCATGCTCAGGCAAACCTGCGAGGGTAGTAATCACTGATGAGTGTCCTGAGTGTGGCTCAGATGCTAAATATCATTTTGATTTGAGTGGCACTGCTTTTGGTGCGATGGCACTCTCAGGCAAAGACGACAAGCTACGCACGGCTGGGAAAATAAATATTCAATATATAAGGTGGCTTCTAAAATTTTAA 522 0.4483 MVPSLQHAFSHLLTLVASLLILLVVPSSCFNPKKIVNSSFASHSSNGDNWSPAVATWYGPAHGDGSEGGACGYGSTVGAPPFSSMISAGSPLLYESGKGCGSCYEVKCTGNACSGKPARVVITDECPECGSDAKYHFDLSGTAFGAMALSGKDDKLRTAGKINIQYIRWLLKF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr18304g00001 173 SMART dpbb_1 86 166 IPR007112 -
Mupr18304g00001 173 Pfam Lytic transglycolase 87 166 IPR009009 -
Mupr18304g00001 173 Gene3D - 33 169 IPR036908 -
Mupr18304g00001 173 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mupr18304g00001 173 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Mupr18304g00001 173 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Mupr18304g00001 173 PRINTS Major pollen allergen Lol pI signature 126 141 IPR005795 GO:0005576|GO:0019953
Mupr18304g00001 173 PRINTS Major pollen allergen Lol pI signature 88 99 IPR005795 GO:0005576|GO:0019953
Mupr18304g00001 173 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Mupr18304g00001 173 SUPERFAMILY Barwin-like endoglucanases 41 168 IPR036908 -
Mupr18304g00001 173 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 173 IPR007112 -
Mupr18304g00001 173 CDD DPBB_EXPB_N 50 168 - -
Mupr18304g00001 173 PANTHER EXPANSIN-B3 23 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr18304g00001 Mupr-Chr18304 858 2382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr18304g00001 29 168 Expansin Gene Family AT1G65680 56.028 5.23e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr18304g00001 - - gmx:100777550 276.559