Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr18224g00002 ATGGAGCGTTACACGCTACCACCCGAAGAAGACGCGGCACCGTCGTGGGCCCAGCCCAATTCGGAAGAGGACGTTGGCGTTGCAATGGGTGCCCCTATGGCTTCCTTTAAATCCATGCTTCAACAACAGCCTCAGTCTCAGCCTCAACCTGAGTCTTACTTCAACTTCAACTCTGCTGTCACCACCGTTCCCTTTGTTCCAAACATGGACTCTTTGTCTTTCCCTCTCGACCCCTTCTCGCCTTCGCTTTCGCTCCCTTTTTTCAACAACAACAACAACAACGTCGACCCGGGCTTCGACTTGGGCCTCGACGCTCCGCCTCCTCTCTTTTCCCAGGCCGGCTTCGACTTCGGAGAACTCGAAGCCCTTGCTGGGAACGCGCCGTTTGCCAACGGGCTCAAGCCTGTTGAGGGGGCGCAACCGCCGCCCACTCTCTTCCGGAAGCGGCGGGGCACGGCGGAGATTCCGGGCCTGGAGACGGTCAGGAGGAAGGGGAGGAAGTGGGAGGAAGGGGGAGGCGAGGAAGGTAGTAGTAGCGTCGACGTCGATGGTTCCGGCTTGAATTATGAGTCTGATGAACAAACTGAGAATAATGGGAATGCTTTGAATTTGAACCCCAATGAGAATGGTGGAGACCACAAGGGGAAGAAGAAGGGTCTGCCCGCCAAAAACCTCATGGCTGAGAGGCGCCGCAGGAAGAAGCTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGACGCAATTGACTACCTGAAGGAGTTGCTGCAGCGAATAAGTGATCTTCATAACGAGCTGGAGTCAACTCCACCTGGCTCATTGCTGCCACCTTCTACAAGCCTTCACCCTTTGACACCCACCCCGCAAACCCTCCCCTGCCGGGTTAAGGAGGAACTGTATCCCGGCACCTTGCCGAGCCCTAAAAACCAAGCTGCAAAGGTTGAAGTTAGAGTAAGGGAAGGGAGAGCTGTGAACATTCACATGTTTTGCACCCGCCGACCAGGTCTTCTGCTTTCCACCATGAGGGCTTTGGATAACCTTGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTCTTCAAAGCTGAGCAATGCACAGAAGGCCAGGATATCCTCCCTGAGCAAATTAAGGCGGTGCTGTTGGATTCAGCAGGCTTTCATGTTCCGTAA 1230 0.5366 MERYTLPPEEDAAPSWAQPNSEEDVGVAMGAPMASFKSMLQQQPQSQPQPESYFNFNSAVTTVPFVPNMDSLSFPLDPFSPSLSLPFFNNNNNNVDPGFDLGLDAPPPLFSQAGFDFGELEALAGNAPFANGLKPVEGAQPPPTLFRKRRGTAEIPGLETVRRKGRKWEEGGGEEGSSSVDVDGSGLNYESDEQTENNGNALNLNPNENGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRISDLHNELESTPPGSLLPPSTSLHPLTPTPQTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCTEGQDILPEQIKAVLLDSAGFHVP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr18224g00002 409 Pfam Helix-loop-helix DNA-binding domain 226 268 IPR011598 GO:0046983
Mupr18224g00002 409 FunFam BHLH transcription factor 215 283 - -
Mupr18224g00002 409 CDD ACT_UUR-ACR-like 339 380 - -
Mupr18224g00002 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 288 IPR036638 GO:0046983
Mupr18224g00002 409 CDD bHLH_AtAMS_like 222 293 - -
Mupr18224g00002 409 SMART finulus 225 274 IPR011598 GO:0046983
Mupr18224g00002 409 MobiDBLite consensus disorder prediction 1 28 - -
Mupr18224g00002 409 Gene3D - 213 282 IPR036638 GO:0046983
Mupr18224g00002 409 MobiDBLite consensus disorder prediction 162 223 - -
Mupr18224g00002 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 219 268 IPR011598 GO:0046983
Mupr18224g00002 409 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 75 406 - -
Mupr18224g00002 409 MobiDBLite consensus disorder prediction 181 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr18224g00002 Mupr-Chr18224 2199 4948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr18224g00002 82 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 64.401 1.23e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr18224g00002 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr18224g00002 - - vun:114162308 498.049