Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr18221g00001 ATGGAGGAAATTGAAGTCCCTCAATACTTCATCTGCCCAATATCCCTCCAAATAATGAAGGACCCAGTCACGGCAATAACGGGCATAACATACGACAGAGAAAGCATCGAGCAATGGCTTTTCACCAACAAAAACACCACATGCCCTTTAACCAAACAACCCCTCCCAAAAGACTCTGACCTAACCCCTAACCACACCCTTCGTCGATTAATCCAAGCCTGGTGCACCCAAAACGCTTCACTTGGCATCGACCGCATTCCAACCCCAAAACCCCCTCTCAACAAAATCCAAGTCCTCAAACTCCTCAAAAACCTCAACGACCCCAAAACCCTCATGCAATTGGAGCTTCTCGCCGCCGAAAACGAGAGGAACAAAAAGTGCTTGCTAGAAGCCGGTGTACCCAGAGCCATGATCATCTTCATCGTTAATTGTCACAAAAAAGGCCAAATCCAAAAGGGTCTCGAACAAGCTCTTAGCATATTGCAATTCGTCAAGATCCCCACACAAGAATGTGCGCAGCTTCTAATGGAAAACGACCAAATATTGGATTCTCTAACGTGGGTTCTGACCCTGGACGAAATGGAAAACTCTAGAGCGGTGAAATCGCACGCGGTTCAAGTGCTGAAAAAAGTGATCAACAAGGGTGACCCGTGGCTCTTGGCGAGACTGAAACCCGAGTTCTTCGAAAGGATCGCGAAGGTTCTACGACACGGGGTGACGCAACAAGGGGCGCGTGCGGCTCTGGAAGTCCTCATGAGCGCGTGCCCCTGGGGCCGCAACAGGGTGATGATGGTGGAAGCGGGTTTGGTCCACGACCTGGTGGAAATCGAACTCACGGCGCCAGAGAAGCGCGTGACGGAGCTCACGCTGGCGATACTGTTCCACCTGTGCTCCTGCGCCAGCGGGAGGGCGGAGTTTGTGCGCCACGAAGGGTCCATCGCGGTGGTGACGGAGCGGATCTTGAAGGTTTCGAAGCCGGTGGACGACAGGGCCGTGTTTGTTCTGTCGCTGGTTTCGAGGTTCTCCGGTACCAACGCGGTGGTGCAGGAGATGCTGAAGGTGGGGAGCGTTGCCAAGCTTTGCATGCTTCTTCAGTCTGATAGTGCCAAGTATCTCAAAGATAAGGCCATGGAGATTCTCAAGGCACACTCCCAGGTTTGGAACAACTCTCCTTGCTTTCCTCTTGCCTCCTTTTCTGCATCCTTCAAATACTGA 1215 0.521 MEEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEQWLFTNKNTTCPLTKQPLPKDSDLTPNHTLRRLIQAWCTQNASLGIDRIPTPKPPLNKIQVLKLLKNLNDPKTLMQLELLAAENERNKKCLLEAGVPRAMIIFIVNCHKKGQIQKGLEQALSILQFVKIPTQECAQLLMENDQILDSLTWVLTLDEMENSRAVKSHAVQVLKKVINKGDPWLLARLKPEFFERIAKVLRHGVTQQGARAALEVLMSACPWGRNRVMMVEAGLVHDLVEIELTAPEKRVTELTLAILFHLCSCASGRAEFVRHEGSIAVVTERILKVSKPVDDRAVFVLSLVSRFSGTNAVVQEMLKVGSVAKLCMLLQSDSAKYLKDKAMEILKAHSQVWNNSPCFPLASFSASFKY 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr18221g00001 404 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Mupr18221g00001 404 PANTHER WDSAM1 PROTEIN 2 394 IPR045185 GO:0061630
Mupr18221g00001 404 SUPERFAMILY RING/U-box 3 83 - -
Mupr18221g00001 404 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Mupr18221g00001 404 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Mupr18221g00001 404 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Mupr18221g00001 404 CDD RING-Ubox_WDSUB1-like 7 64 - -
Mupr18221g00001 404 Gene3D - 74 391 IPR011989 -
Mupr18221g00001 404 SUPERFAMILY ARM repeat 110 370 IPR016024 -
Mupr18221g00001 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 73 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr18221g00001 Mupr-Chr18221 4639 6347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr18221g00001 2 396 U-box Gene Family AT3G11840 41.761 7.24e-116 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr18221g00001 - - gmx:100798446 637.106