LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr1816g00005	ATGGCCCTAAGGCCCTTCCAATTCAACTTCTCGCGCGATAGATTGCTCTTTCTCCTCCGCTCTTCTCTATCTCATTCGTTTCCCTCTCCTCTCCGCTCTCCCAATTTCCCCCAAACTTCCCCCCTCGCTTTCTCCTCCCGCCACTTCGCCGCCGCCGCCGCCGCCCCTCTCGCGCGCCCTCCGCCGCCGCCGCTTCTCGACGCCATGGCGCAGAAAATCGGAAAGTCCACGCGCCGCCCCGGCGCTTCCTCCAAGGCCAGGGTTTACGTCGACGTTAACGTTGTTCGCCCCAAAGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGGAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACGGATGGTGAGAAATGCATCATCAAGATCCTGAAACCCGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCTAATATTGTGAAGTTGCTTGACATTGTTAGAGACCAGCAGTCAAAGACTCCCAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTGAAACCACATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAGTATAATGTTCGTGTGGCTTCAAGATATTTCAAAGGCCCCGAGCTTCTTGTTGATCTTCAAGATTATGATTACTCTCTAGATCTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAGCCATTTTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCCAAGGTACTTGGGACAGATGAATTAGGTGCATATCTGGATAAGTATCGGATAGAATTGGACCCACATCTCGCAGCACTCATCGGGAGACATACTCGTAAGCCATGGGCAAAGTTCATTAATGTAGATAATCATCACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAATTACTACGCTATGATCACCAAGAACGTCCAACTGCAAAAGAAGCCATGGGCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTGCACATTGA	1188	0.4731	MALRPFQFNFSRDRLLFLLRSSLSHSFPSPLRSPNFPQTSPLAFSSRHFAAAAAAPLARPPPPPLLDAMAQKIGKSTRRPGASSKARVYVDVNVVRPKEYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDGEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELGAYLDKYRIELDPHLAALIGRHTRKPWAKFINVDNHHLAVPEAVDFVDKLLRYDHQERPTAKEAMGHPYFNPVRNAESSRTRAH	395

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr1816g00005	395	ProSitePatterns	Protein kinases ATP-binding region signature.	122	145	IPR017441	GO:0005524
	Mupr1816g00005	395	Gene3D	Phosphorylase Kinase; domain 1	102	191	-	-
	Mupr1816g00005	395	FunFam	Casein kinase II subunit alpha	102	192	-	-
	Mupr1816g00005	395	SMART	serkin_6	116	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr1816g00005	395	Gene3D	Transferase(Phosphotransferase) domain 1	192	395	-	-
	Mupr1816g00005	395	Pfam	Protein kinase domain	116	198	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr1816g00005	395	Pfam	Protein kinase domain	199	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr1816g00005	395	SUPERFAMILY	Protein kinase-like (PK-like)	87	385	IPR011009	-
	Mupr1816g00005	395	MobiDBLite	consensus disorder prediction	375	395	-	-
	Mupr1816g00005	395	ProSiteProfiles	Protein kinase domain profile.	116	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr1816g00005	395	FunFam	Casein kinase II subunit alpha	179	384	-	-
	Mupr1816g00005	395	PANTHER	CASEIN KINASE II SUBUNIT ALPHA	198	390	IPR045216	GO:0004674\|GO:0006468
	Mupr1816g00005	395	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	209	221	IPR008271	GO:0004672\|GO:0006468
	Mupr1816g00005	395	CDD	STKc_CK2_alpha	97	381	IPR045216	GO:0004674\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr1816g00005	Mupr-Chr1816	20505	31266	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr1816g00005	114	389	Core Cell Cycle Gene Families	AT1G20930	29.114	3.06e-36	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CK2	Mupr1816g00005		Pkinase	2.3e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr1816g00005	K03097		-	gmx:100776388	662.144