Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr18077g00001 ATGGCGGAACCTCTCCCAAACACCGAACTCTCTCCCTCTAAAACCCTAAACCCAACCAACGGTCATGATTTCACTTCGGAGCCGCATCAAATGGCTCCGCAAGACGCTCAACACCATCCACAAAACGACGACGTCGTTCCGACCGAGAAACGAAAGAGGGACGACGACGACGACCGTTCGCTCCATCCCCTGTGGAAGACGAGCCTCTGTTCCTACTTCCGGAGCCACAATGGTTCCTGCAGCCACGGCGACGCGTGCCGATACGCGCACGGCGAGGAGGAGCTCCGCCTTCGCCCCGACAACACTTGGGACCCGACTTCCGAGCGAGCGAAGAAGTACTTGAAATCCGAGACGGGTGAAAAGCACGCCGTCTCGGAGGGCGTCATGATGACGGAGGCCGTCGTCGATGGTGGCGACGATGACGGTTCTGGCTCCAATCACGCGCTTAGTAAATGCTTGGTGCATTTGCCGCGGAAATGGTGCTCCGAGAATTTGAGGAGTTTTCTCAACCAAGAGGCATGCATGTTCGGTTGTTTTCGAGGTATACCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTGTTACTTTTGAAGACGAAGAACAAATGAAGAGTTCATCAACGGGTTTAGAAGGAAAATCAATTGGCAACAAGAAGATAAAGGTTGCCGATGTCATTCCTCGTTCATTTGAAAAGAAGAGTAACGCTAACGTTGCATCCCATCAAGAATTTGACGAGGAGAATACAGGGGTTGATGTTCCTTCAAGTGGGACTTTGAATGATGAAACAAATAATGATAAGTTGGCTGTTGATGGTTCTGTGTCAAGGGCAAGAAATGTGCGTGACGCAGCGACTCCTCTAGCTCATATGGCCTATGCTGATCAGTTGGAGCAGAAAAAAAGCTCTCTCATGCAGATTCTCAAAAAGCTTACTAGAAATGCTCGTAAAGCTTGTCCAAATGGCGTTTCACTTCCTGAGTGGATTCTCAAGTCTAGGGAAATAGTATTTTCACCATTTCCTTCTCACATTTCTGCAGGTGGTCTTCCGTGCAAACTAGAGGGTGTTATTGCATCTCCAATTGTAAATGGATATCGTAACAAGTGTGAATTTTCTGTTGGATATTCTCTGGAAGGCAAAGTGACAGTAGGCTTCATGCTTGGAAACTTCAGGGAAGGTGTAACAGCAGTCGAGGAAGCAGTGGATTGCCCAAACGTTTCAACGATTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTGCAGCACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGAACAAATGAGAATGTTGTTGATGCTGAAACTTTTGGTGGTATTGCAGAGGTCATGCTTATTGTGCAG 1413 0.4692 MAEPLPNTELSPSKTLNPTNGHDFTSEPHQMAPQDAQHHPQNDDVVPTEKRKRDDDDDRSLHPLWKTSLCSYFRSHNGSCSHGDACRYAHGEEELRLRPDNTWDPTSERAKKYLKSETGEKHAVSEGVMMTEAVVDGGDDDGSGSNHALSKCLVHLPRKWCSENLRSFLNQEACMFGCFRGIPFKHAKKKKGMMIGFVTFEDEEQMKSSSTGLEGKSIGNKKIKVADVIPRSFEKKSNANVASHQEFDEENTGVDVPSSGTLNDETNNDKLAVDGSVSRARNVRDAATPLAHMAYADQLEQKKSSLMQILKKLTRNARKACPNGVSLPEWILKSREIVFSPFPSHISAGGLPCKLEGVIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSTIACKYATIFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRTNENVVDAETFGGIAEVMLIVQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr18077g00001 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 65 92 IPR000571 GO:0046872
Mupr18077g00001 471 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 288 450 IPR029063 -
Mupr18077g00001 471 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 81 471 IPR045850 -
Mupr18077g00001 471 Gene3D - 368 471 - -
Mupr18077g00001 471 SUPERFAMILY RNA-binding domain, RBD 155 236 IPR035979 GO:0003676
Mupr18077g00001 471 SMART c3hfinal6 64 92 IPR000571 GO:0046872
Mupr18077g00001 471 Gene3D - 153 228 IPR012677 -
Mupr18077g00001 471 MobiDBLite consensus disorder prediction 236 269 - -
Mupr18077g00001 471 ProSiteProfiles Zinc finger C3H1-type profile. 64 93 IPR000571 GO:0046872
Mupr18077g00001 471 MobiDBLite consensus disorder prediction 42 60 - -
Mupr18077g00001 471 Coils Coil 296 316 - -
Mupr18077g00001 471 Gene3D - 58 97 - -
Mupr18077g00001 471 SUPERFAMILY CCCH zinc finger 62 97 IPR036855 GO:0046872
Mupr18077g00001 471 MobiDBLite consensus disorder prediction 8 37 - -
Mupr18077g00001 471 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr18077g00001 Mupr-Chr18077 45 2110 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr18077g00001 zf-CCCH 1.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr18077g00001 K15332 - gmx:100777601 741.11