LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr17928g00001	ATGGATGAATATTCGGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAAGGGATGGGCCATGTGTTTAGAGATACTGCTAATGCTAGAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACTCTCCAAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCAGCTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACTTTTTCCAAGGCTAGTAGCCCAGGAAAACCACTTATAAAGCCTCGGAGATCATCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGAATCAGAAGTTCCAAAACTCGCTTCTTCCCGGGAAAAAATTCAGACAGGGCTTCAAGCTGAAGTGGAAAATACAGTGTCTGGTAATGTCATGATGGAAGTAGGAAGTTCTAGTGTAGGATCCAATACAAGATCTCGGAGGAATTTTCATCCAAAGCCTGGATTACCTGGTCAAGAAATTAAAAGCACTGGTCCAGTGGCACGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAGATGCAACTCTGTTTCTGATGTCGTCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGATATGATAAAAAAGAGAAATTGCGAAGGGGAAGGTAGTTCCACTGCTAGAGGGAAGAAGATGAGTGGGTCTTCATTAGAAGGACGGAATTCTGGTCCCAGAAATGGCATATCTATATCTGATTCAAGAATATCTAGGAATACTCCTCGTAGGGACAGGTCAGATAGCAACATGGCACCGGCTAGAACTCGAAAATCGATTGGTGGTCATGTCAGGGGAAGGCCTTCTAGCCAAGGAAATGCTAATCCCGTGTCACCCAATGAGTCCCTTGTCATGATACCTTCTTTGCCTCATTCTGGCGGTCTTAATGCTCCTGGTGCAGCACATCATACTTCAGATAGTCCCTTAAGTTGTCCTAGCTCTCATAATAGACCAGGTATTGGTAGTGAGGAGTTATATGGTGTTATGCCTGTATCTCCTTCAGAATATGGCATCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATGGATAGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATCGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTATTGGAATCCAACCTGTTCCTTACTGGACTAAACTTCTATGATCCGCATAGAGAAATGCGATTGGACATTGATAACATGTCATATGAGCAACTGCTGGCTCTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAGCAGTATCAGAATGCCTAAAGAAAAGTTTCTATCAGTCCTCACCCTCGGACAATGCAGCTGAGAGTTGCAATGAAGATAAGGATGATAGTGATACCAAATGCAGCATTTGTCAGGAGGAATATGTGGTTGCGGATGAAGTGGGGAGTTTGCTATGCGAGCACATGTATCATGCGGTTTGCATACAGCAGTGGCTACGGTTGAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACTGTCTAATTCATCCCCATCCCAATGA	1632	0.4418	MDEYSGKRAIDGVVVPRKGMGHVFRDTANARDRNGQVCSRLTCSSRVNSPKGAQIGSSEKGKSLKPSIQSSSAGKEAIGSSSRTFSKASSPGKPLIKPRRSSSSQLETDSSETSSVQDESEVPKLASSREKIQTGLQAEVENTVSGNVMMEVGSSSVGSNTRSRRNFHPKPGLPGQEIKSTGPVARAGTSRYGLRNLRCNSVSDVVPAGCSPSDSTLNRRKDMIKKRNCEGEGSSTARGKKMSGSSLEGRNSGPRNGISISDSRISRNTPRRDRSDSNMAPARTRKSIGGHVRGRPSSQGNANPVSPNESLVMIPSLPHSGGLNAPGAAHHTSDSPLSCPSSHNRPGIGSEELYGVMPVSPSEYGITHSLMNLDSFRRRYNMDSIAEVLLALERIEQDVELTHEQIRLLESNLFLTGLNFYDPHREMRLDIDNMSYEQLLALEERMGTVSTALTEEAVSECLKKSFYQSSPSDNAAESCNEDKDDSDTKCSICQEEYVVADEVGSLLCEHMYHAVCIQQWLRLKNWCPICKASVALSNSSPSQ	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	294	310	-	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	218	234	-	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	1	20	-	-
	Mupr17928g00001	543	SUPERFAMILY	RING/U-box	480	536	-	-
	Mupr17928g00001	543	Pfam	Ring finger domain	489	531	IPR001841	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	266	280	-	-
	Mupr17928g00001	543	FunFam	E3 ubiquitin-protein ligase arkadia	450	536	-	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	238	265	-	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	151	166	-	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	32	89	-	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	151	183	-	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	25	136	-	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	207	353	-	-
	Mupr17928g00001	543	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	74	534	IPR045191	GO:0061630
	Mupr17928g00001	543	ProSiteProfiles	Zinc finger RING-type profile.	490	531	IPR001841	-
	Mupr17928g00001	543	SMART	ring_2	490	530	IPR001841	-
	Mupr17928g00001	543	MobiDBLite	consensus disorder prediction	96	122	-	-
	Mupr17928g00001	543	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	474	542	IPR013083	-
	Mupr17928g00001	543	Coils	Coil	392	412	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr17928g00001	Mupr-Chr17928	4314	6810	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr17928g00001	374	531	C3H Transcription Factor Family	AT2G15530	41.772	1.25e-31	127

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr17928g00001	-		-	gmx:100787213	917.146