Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17920g00004 ATGAGGCCGATTTTTGCTGGGAACTTGGAGTACGATACCCGTCAATCAGAGCTTGAACGGTTGTTCTCCAAGTATGGCAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGAAAAGCGAAGGCTTTCTGTGGAGTGGGCTAGGGGTGAACGTGGACGTCATCGCGATGGCTCGAAGGCAAACCAGAGGCCAACAAAAACCCTGTTTGTTATTAACTTCGACCCAATCCGTACTAGAGTTCGTGATATAGAAAAACACTTTGAGCCTTATGGGAATGTTCTCCATGTTCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATGGTGAGAGAGGTGACAATTATGACAGTCCTAGAAGAGGGGGTTATGAGAGATCAGCCAGTCCAGTTTATCACAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGCCCTGCCTATGATAGGTATAATGGTGGAGCAAACAGGCGGAGGAGTCCTGATTATGGCAGGCACAGAAGTCCTGATTATGGCAGGCGTAGGAGTCCTGATTATGGCGGGCGCAGGAGTCCTGATTATGGGAAACATAGGAGTCCTGATTATGGGAAGCACCGGAGTCCTGAATTTGGTAGATATCGCAGCCATTCACCGGTGCGAAGGTCAAGAGAACTTAAGTGA 825 0.4776 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYERSASPVYHRRPSPDYGRPRSPAYDRYNGGANRRRSPDYGRHRSPDYGRRRSPDYGGRRSPDYGKHRSPDYGKHRSPEFGRYRSHSPVRRSRELK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17920g00004 274 SUPERFAMILY RNA-binding domain, RBD 3 165 IPR035979 GO:0003676
Mupr17920g00004 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Mupr17920g00004 274 MobiDBLite consensus disorder prediction 210 274 - -
Mupr17920g00004 274 MobiDBLite consensus disorder prediction 164 274 - -
Mupr17920g00004 274 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 252 - -
Mupr17920g00004 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Mupr17920g00004 274 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Mupr17920g00004 274 Gene3D - 1 83 IPR012677 -
Mupr17920g00004 274 Gene3D - 84 173 IPR012677 -
Mupr17920g00004 274 SMART rrm1_1 92 158 IPR000504 GO:0003723
Mupr17920g00004 274 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mupr17920g00004 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Mupr17920g00004 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Mupr17920g00004 274 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17920g00004 Mupr-Chr17920 24837 27243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17920g00004 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.626 3.96e-09 55.1