Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17920g00002 ATGGACGTGACGGTGTTCTTGTTTTATGAGAAGAAAAAAGGGCTTATTTCTTTGCCTAAGTTGTGTTATACAATGATGATTCTAGATGCGTTATCTTCTGGTCCTACCGGAACAGCCATTTCTCAAAGTATAGATACCATTGCTGAGTTCCTAGTTAATGCTAACAATGTCCTTGTGAAAAAGGATAGTTTTGAGGAACTTTCTGCTTACATGGAAAGAATTAAGCTTATCTTAGAAGAATTGAGGAAAGGCAAAGTCAGTGATTCTGAGATATTCAACCAAGCCATTGAGATCATGAACAAAGAAATTAAAGATGCACATCAATTGGCTCAAGATTGCAGCAAGAAAAGCAAGGTTTATCTACTAATGAATTGTAGGTCCATTGTTAAGAGCTTAGAAATACATACAAAACAATTGAGTAGGGCACTTGGTCTTCTTCCTTTAGCCACATCAGGTCTTTCTGCAGGAATACTAGAAGAAATTGAAAAGTTGAGTGACAATATGCAGAAAGCTGGATTTAAGGCAGCTCTAGCTGAAGAAGAGATTTTAGAGAAAATTGAGTTAGGTATAAGGGAAAACAATGTTGATCGTTCCTATGCCAATAATTTGCTAGTTCTCATTGCTAAGGCTGTTGGGATTAGGAATGAGAGGTCAACAATAAAGATGGAACTTGAAGAGTTTAAGAGTGAAATTGAAAATGTGCGTGTTAGAAAGGACCTAGCTGAAGCTATGCAAATGGATCAAATCATATCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCCAAGGACAAGGAACTCAAATACTTCGCCAAACGCAAATCTTTGGGTAGTCAAATCTTGGAGCCTTTGCAGTCATTTTATTGTCCCATTACCCAGGATGTTATGGTGGATCCTGTAGAAATTTCATCAGGGCAGACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCAGAAGGAAACAAATTGTGCCCCTTGACGTTGATTCCTTTAGACACATCAATTTTGAGACCTAATAAAAAGTTGAAACAATCCATACAAGAGTGGAAGGATAGGAATATAATGATTACAATTGCTACATTGAAAGAAAAAATCTTGTCTGAAAATGATGATGAAGTGCTGCATGACCTACAAACTCTTCAAAATTTGTGTAAGGAAAAAGACCAACACAGAGAATGGGTTATACTCGAGAATTACATACCAACTCTCATCCAAATTCTATCAAGAAACCGTGATATAAGAAAATATTCTCTTGTCATCCTTGGTATGCTGGCAAAGGATAGTGAAGAAGCTAAGGAAAGAATTTCAACAGTTGATCATGCAATTGAATCGATTGTTCGATCTCTTGGACGTCGTCCAGAAGAGAGGAAGTTAGCAGTAGCATTATTGCTCGAATTATCTAAATATGATTTGGCACGAGAACACATTGGAAAAGGTCAAGGTTGTATACTACTATTGGTGACTATGTCTAGTGGAGATGACAGTCAAGCAGCTAAAGATGCAACCGAGTTATTGGAGAATCTTTCATACTCTGATCAAAATGTTATACAGATGGCAAAAGCAAATTATTTTAAACATTTATTGCAGCGTCTCTCCTCAGGACCAAACGATGTAAAGATGATCATGGCTACAAATTTAGCAGAAATGGAGTTAACGGACCATAATAGAGAGTCCTTGTTTGATGGTGGTGTATTGGTTCCTCTTCTTCAAATGTTCTCACATAATGATCTTAAGGTGAAATTAGTTGCTATTAAAGCTCTTAGGAATTTATCCAGTTCAAAGAAAAATGGACAGGAAATGATAAGACAAGGGGCTGCACGACCACTGCTTAACCTCCTTTTCAATCTCAACATACAAACCTCAAGTTTGCGGGAAGATGTAGCAATCATAATTATGCAACTTGCTGCATCAACTATTTCTCAAGATGCTCAAATGCCTATTTTATTACTAGAGTCTGGTGATGATGTTTTTCATCTCTTCAATTTAGTCAGTGTCACACAGCCAGTTCTACAACAGAACATTATCCAGACATTTTATGCCTTGTGTCAAACACCTTCAGCTTCATTTATTAGAACCAAACTAAAGGAGTGCTCTGCTGTTCCAAAATTGGTTCAATTGTGTGAGAATGAAAACCTAAACCTACGAGCAAGTGTTGTGAAGTTGTTTTCTTGTGTGGTAAAGAGTTGTGATGAAGCAACTATCTTGGAGAATGTGGATAAAAAATTCATTAATACTTTACTTCGGATTATAAAATCTTCATCAGATGAAGAGGAAATACTTTCTGCTATGGCAATAATATGTTATCTTCCAGAAATTGAGCAGATAACTCAATGGCTTTTGGATGCTGGTGCACTACCAATTATTAAAAGTTATGTCCATGATGGGAAAGAAAGAGATCATCAAAGGAGTAACTTAGTAGAGAATACCATCGGTGCCTTATGTCGTTTTACAGTTGCAACAAATGTGGAATGGCAAAAAAGTGCAGCTGAAATTGGGATCATAACTATTTTAGTGCAATTGCTTGAGAATGGAACCACCTTGACAAAACAACGCGCGGCGCAGTCTCTTGCTCAATTTTCTAAAAGTTCAGTTAAGTTGAGCAAGGCAATACCGAAGCGTAAAGGACTATGGTGCTTTTCAACTCCTGCTGATATTGGTTGCATGGTTCATGGAGGAATATGCTCAGTCAAGTCATCATTTTGCCTTTTGGAGGCTAATGCAATTGGACCACTCACAAGGACTCTTGGGGAAGCTGATCTTGGAGTTTGTGAGGCTTCTTTGGATGCATTATTAACATTAATAGAAGGTGAAAGATTGCAGAGTGGTAGTAAAGTCCTTGCTGAAGCAAATGCTATACCACTAATTATAAGATACCTTGGTTCCCCTTCCCCTAGCTTGCAAGAGAAGTCTCTACATGCTTTGGAAAGGATTTTTAGGCTAGTCGAGTTCAAACAAAAGTATGGAGCATCAGCTCAAATGCCTCTAGTTGACTTGACTCAGCGGGGTAATGGTAGTGTTAGATCCATGTCAGCTAGAATATTGGCACATTTGAATGTGCTTCATGATCAATCTTCATATTTC 3081 0.3778 MDVTVFLFYEKKKGLISLPKLCYTMMILDALSSGPTGTAISQSIDTIAEFLVNANNVLVKKDSFEELSAYMERIKLILEELRKGKVSDSEIFNQAIEIMNKEIKDAHQLAQDCSKKSKVYLLMNCRSIVKSLEIHTKQLSRALGLLPLATSGLSAGILEEIEKLSDNMQKAGFKAALAEEEILEKIELGIRENNVDRSYANNLLVLIAKAVGIRNERSTIKMELEEFKSEIENVRVRKDLAEAMQMDQIISLLERADAASSPKDKELKYFAKRKSLGSQILEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKKLKQSIQEWKDRNIMITIATLKEKILSENDDEVLHDLQTLQNLCKEKDQHREWVILENYIPTLIQILSRNRDIRKYSLVILGMLAKDSEEAKERISTVDHAIESIVRSLGRRPEERKLAVALLLELSKYDLAREHIGKGQGCILLLVTMSSGDDSQAAKDATELLENLSYSDQNVIQMAKANYFKHLLQRLSSGPNDVKMIMATNLAEMELTDHNRESLFDGGVLVPLLQMFSHNDLKVKLVAIKALRNLSSSKKNGQEMIRQGAARPLLNLLFNLNIQTSSLREDVAIIIMQLAASTISQDAQMPILLLESGDDVFHLFNLVSVTQPVLQQNIIQTFYALCQTPSASFIRTKLKECSAVPKLVQLCENENLNLRASVVKLFSCVVKSCDEATILENVDKKFINTLLRIIKSSSDEEEILSAMAIICYLPEIEQITQWLLDAGALPIIKSYVHDGKERDHQRSNLVENTIGALCRFTVATNVEWQKSAAEIGIITILVQLLENGTTLTKQRAAQSLAQFSKSSVKLSKAIPKRKGLWCFSTPADIGCMVHGGICSVKSSFCLLEANAIGPLTRTLGEADLGVCEASLDALLTLIEGERLQSGSKVLAEANAIPLIIRYLGSPSPSLQEKSLHALERIFRLVEFKQKYGASAQMPLVDLTQRGNGSVRSMSARILAHLNVLHDQSSYF 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17920g00002 1027 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 563 605 IPR000225 GO:0005515
Mupr17920g00002 1027 Coils Coil 217 244 - -
Mupr17920g00002 1027 CDD RING-Ubox_PUB 287 336 IPR045210 -
Mupr17920g00002 1027 SMART arm_5 895 935 IPR000225 GO:0005515
Mupr17920g00002 1027 SMART arm_5 552 592 IPR000225 GO:0005515
Mupr17920g00002 1027 SMART arm_5 593 636 IPR000225 GO:0005515
Mupr17920g00002 1027 SMART arm_5 939 979 IPR000225 GO:0005515
Mupr17920g00002 1027 SMART arm_5 387 426 IPR000225 GO:0005515
Mupr17920g00002 1027 SMART arm_5 469 510 IPR000225 GO:0005515
Mupr17920g00002 1027 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Mupr17920g00002 1027 Pfam U-box domain 287 352 IPR003613 GO:0004842|GO:0016567
Mupr17920g00002 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 350 IPR013083 -
Mupr17920g00002 1027 Gene3D - 886 1025 IPR011989 -
Mupr17920g00002 1027 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Mupr17920g00002 1027 SUPERFAMILY RING/U-box 275 353 - -
Mupr17920g00002 1027 Gene3D - 351 453 IPR011989 -
Mupr17920g00002 1027 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 38 1027 - -
Mupr17920g00002 1027 Coils Coil 161 181 - -
Mupr17920g00002 1027 Gene3D - 454 863 IPR011989 -
Mupr17920g00002 1027 SUPERFAMILY ARM repeat 357 1017 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17920g00002 Mupr-Chr17920 9433 14528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17920g00002 285 1027 U-box Gene Family AT1G76390 28.408 1.12e-59 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17920g00002 - - gmx:100799969 1657.5