Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr17898g00003 | ATGGAGGAAACACATTATTCGTCGGAAACCGAATCCACCGGCTTCTCCGCCCCTACTGCCAGCATCGAGGTCGCCGAGAAGCGTCATCAAGATTCGACTGATGCAAAGGCTCAATACTTAGCTTCTGCTCAAAATTCGTCGAAGAGAAAATCACCACTTGATCATGATCATTGTGATGCAAAGAAAAAAAGTAGTCAACCCTCGCGTTTACTCCTCTGCCATATATGTTTTGATTACAAACCAGTGTCTGATATGTTCAAACATGGCAAGTGTAACCACCAATTTTGCACTCTCTGCATAACCAAACACGTGGCCACTAAAATACACCAGAATATTCTCAAGGTGATTTGTCCGAGCCCTAATTGTTCCGTGGAATTGGAGCCTGAACATTTCTTGCACACTATTTTGCCTAGTGAAGTAATTGGTAGATGGGAATGTGCGAGATGTGAATCTTTGATTGTTGCTTCAGAGAAATCTTACTGCCCCTTTAAGGATTGTTCTGTTTTGCTGGTGAATGATGGAGGAGAAGTTGTGACCAGTGCCGAGTGCCCCTCTTGTCATAGGTTATTTTGCGCGCAGTGTAAGGTTCCTTGGCATGGGAACATGACTTGTGAGGAATTCCAAGCGAATAGTGATGGAAAAGAATTGGATAACAAGTTTTTCAAGTTGGCACGAAGGAAAAATTGGCAGAAATGTCCCCAGTGCACTATGTTTGTCCAGAAACATAGTGTGGATGCAACTTCTGCTATGTTTGTGGCGAGAATTGGAAGTTTGGACATGTATGCCAGAAGCGTCGGTCCACATGAAACCGGGATACTTGATTTATCACTTTTATGTTTCTCTAAACCAGATCAATCTTTTATTGTTTTCAGACGG | 876 | 0.4292 | MEETHYSSETESTGFSAPTASIEVAEKRHQDSTDAKAQYLASAQNSSKRKSPLDHDHCDAKKKSSQPSRLLLCHICFDYKPVSDMFKHGKCNHQFCTLCITKHVATKIHQNILKVICPSPNCSVELEPEHFLHTILPSEVIGRWECARCESLIVASEKSYCPFKDCSVLLVNDGGEVVTSAECPSCHRLFCAQCKVPWHGNMTCEEFQANSDGKELDNKFFKLARRKNWQKCPQCTMFVQKHSVDATSAMFVARIGSLDMYARSVGPHETGILDLSLLCFSKPDQSFIVFRR | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr17898g00003 | 292 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 30 | 242 | IPR031127 | GO:0004842|GO:0016567 | |
| Mupr17898g00003 | 292 | SUPERFAMILY | RING/U-box | 152 | 209 | - | - | |
| Mupr17898g00003 | 292 | ProSiteProfiles | TRIAD supradomain profile. | 69 | 292 | IPR044066 | - | |
| Mupr17898g00003 | 292 | ProSiteProfiles | Zinc finger RING-type profile. | 73 | 118 | IPR001841 | - | |
| Mupr17898g00003 | 292 | ProSitePatterns | Zinc finger RING-type signature. | 91 | 100 | IPR017907 | - | |
| Mupr17898g00003 | 292 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 156 | IPR013083 | - | |
| Mupr17898g00003 | 292 | SUPERFAMILY | RING/U-box | 68 | 151 | - | - | |
| Mupr17898g00003 | 292 | CDD | BRcat_RBR_unk | 155 | 207 | - | - | |
| Mupr17898g00003 | 292 | Pfam | IBR domain, a half RING-finger domain | 155 | 204 | IPR002867 | GO:0008270 | |
| Mupr17898g00003 | 292 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Mupr17898g00003 | 292 | FunFam | RBR-type E3 ubiquitin transferase | 68 | 155 | - | - | |
| Mupr17898g00003 | 292 | SMART | ibrneu5 | 142 | 204 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr17898g00003 | Mupr-Chr17898 | 6531 | 7719 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr17898g00003 | 73 | 240 | C3H Transcription Factor Family | AT2G19610 | 26.966 | 4.79e-16 | 75.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr17898g00003 | K11975 | - | gmx:102663173 | 298.13 |