Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1787g00008 ATGGTTTCTCCTAGAATGATCAACAATCGATACCCACCAGAATACCGTCCTCGCAATCCTATAGAGGAATTGGAAATGTTGGGTGAGTTAAGCAACACCGAAGAAGATTATTCTAGTACTGATGAAGATGAGAGTAACGAAGGAGAAGAGGAGAGTGAGGAAGAATATTCAGATAGTAATGAAGCAGAAGTAGATGATATAGATCATGCCGCCTTACCTTCTGTGAATAGAGATGTTATTATTCCTTTTGTTCAAGTCCCAACAACAACTCCACCTGCACCCAGCAATGGTGGTGCAAATGACATGTCGATGTTACTGACTGATCCTGATATATTTGATTGTTACGTGTGTTACGAAACATTAAGTATTCCAGTCTATCAGTGCGTCAACGGACACATTCTTTGTTCTACCTGCTGTTGTAAGGTAGGGCACAAGTGTCCTTTGTGCTCAATGTTGGTCGGGGACAAGCGTTGCCGAGCAATGGAGGCAGTGTTAGCATCGATGAAAAGTGCGTGCTCAAATGCAAGATATGGTTGTAAAATGATGGTGAGGTATAGCGAGAAACGTGAGCATGACAAGACATGTGCCTTTGTACCTTGTTCATGCCCGCAGCCAAATTGCAACTGGCTTTCTCATTCCAGTCAATTAGGGCAACACTTGACCCAGGACCATTCCTTTTACATAATTTCATTCCAATATGGTCAATTTTTCAATGTGCGGTTCAGGTACAACACCAGGTTTCGTTTTCTTCAATCGTCAAGTGATGGAAAACTCTTTGTTATTAACAATCAAATGGAGGACACAAAAAATTTGGTGTTTCTTTCTCACATTGGGCCTAACTCGTTGGTTTCACAGTTTTACTATGAAGTTAAGGCTATGTCTAACGGTGGAGTTCTATTACCCCAAACTTCTGTGGAGACCACTCAAGGAGGAACATTTGCGTTACCGTTAAGGTTTTCTTCCATTCCACATGAGATGCTTTCTCTTTCTAGATGGATTGATTTGCAGTTTCGGATTACTACACACTCTGACGAGGGCCCCTCTACGTCTTAA 1053 0.4188 MVSPRMINNRYPPEYRPRNPIEELEMLGELSNTEEDYSSTDEDESNEGEEESEEEYSDSNEAEVDDIDHAALPSVNRDVIIPFVQVPTTTPPAPSNGGANDMSMLLTDPDIFDCYVCYETLSIPVYQCVNGHILCSTCCCKVGHKCPLCSMLVGDKRCRAMEAVLASMKSACSNARYGCKMMVRYSEKREHDKTCAFVPCSCPQPNCNWLSHSSQLGQHLTQDHSFYIISFQYGQFFNVRFRYNTRFRFLQSSSDGKLFVINNQMEDTKNLVFLSHIGPNSLVSQFYYEVKAMSNGGVLLPQTSVETTQGGTFALPLRFSSIPHEMLSLSRWIDLQFRITTHSDEGPSTS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1787g00008 350 ProSiteProfiles Zinc finger SIAH-type profile. 167 225 IPR013010 GO:0008270
Mupr1787g00008 350 SUPERFAMILY TRAF domain-like 170 302 - -
Mupr1787g00008 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 220 IPR013083 -
Mupr1787g00008 350 CDD RING-HC_SIAHs 112 150 - -
Mupr1787g00008 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 93 339 IPR044286 -
Mupr1787g00008 350 MobiDBLite consensus disorder prediction 35 62 - -
Mupr1787g00008 350 MobiDBLite consensus disorder prediction 1 62 - -
Mupr1787g00008 350 Pfam Seven in absentia protein family 157 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1787g00008 Mupr-Chr1787 17550 19550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1787g00008 74 241 C3H Transcription Factor Family AT2G41980 29.825 5.39e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1787g00008 K04506 - gmx:102662420 297.745