Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1782g00009 ATGGTGGTTAGTTTTCAAGAAGCTAAGAGGACGGATGAATCAAATTGTTTAGTGTATCCCGATCAATGTTATAAAACTCGAGTTTATGTTGAGATCTTAGGAGAGTTGATTGGAGCCTTAATGACTAAAGTTAAGATTGACTACAAACTACCATATGTATTTACTGAAACAATAAGTTGTGGAAGCTGCGGTGGAAATTACAATGCAGCTGAATTTTGGATCGGGTGCGATATATGTGAGTGGTGGTTCCATGGGAAATGTGCTATGATTACCCCTGAACAGGCTGAGAAACTACAGCAATATAAATGTCCATCATGCGCCTTAAGGAAGGACAGGCTCTAG 342 0.3947 MVVSFQEAKRTDESNCLVYPDQCYKTRVYVEILGELIGALMTKVKIDYKLPYVFTETISCGSCGGNYNAAEFWIGCDICEWWFHGKCAMITPEQAEKLQQYKCPSCALRKDRL 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1782g00009 113 SUPERFAMILY FYVE/PHD zinc finger 51 110 IPR011011 -
Mupr1782g00009 113 ProSitePatterns Zinc finger PHD-type signature. 60 106 IPR019786 -
Mupr1782g00009 113 SMART PHD_3 59 107 IPR001965 -
Mupr1782g00009 113 PANTHER CPG BINDING PROTEIN 56 111 IPR045104 GO:0006355|GO:0042393
Mupr1782g00009 113 ProSiteProfiles Zinc finger PHD-type profile. 57 109 IPR019787 -
Mupr1782g00009 113 FunFam PHD finger alfin-like protein 55 108 - -
Mupr1782g00009 113 Pfam PHD-finger 60 107 IPR019787 -
Mupr1782g00009 113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 107 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1782g00009 Mupr-Chr1782 66303 70099 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1782g00009 60 112 Alfin-like Transcription Factor Family AT5G05610 66.038 5.12e-22 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr1782g00009 PHD 1.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1782g00009 K26274 - vvi:100251933 105.531