Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1780g00002 ATGGGACAAATCTACCCCAAACAATTTGATGTTGCTTATACAACATTTGTGTGGTCACCGACAACTCTGACGATGACATGGCCAATCCCAAGCCGAGAACTCTCTGTTTTGCCATTGTCCAACAAGGCCCATTATGGATTATATTCGAGCGCAACATTGAGTTGGGGCAGGAGCTTTTTTTCCTCCAACAAGACCATTGATGGTCGTGGTGTAAACGTGCAAATCAAGAATGACGATGGCCTCACCATGCAGTATATGAACAATGTCAACATCCATGGAATTTGCATCAAGAAAATCATGCCCAAAGATGATGGAATGATTAGGGACTCCTACAACCACTTTGGGTTGAGGACAAGAAGTGACGGCGACGCCATCTCCCTATTTGGAGCCTCCAATATTTGGATAGATCATGTTTCCCTCTCTAACTTCATCGACGGTCTTATCGATGTCATCAAGGGCTCTATCGCCGTCACCATCTCAAATTGCCACATGACCAAACATAACGATGTGATAATCGCCAAGGTTTTCAAGGAAGTTATTATCTAA 546 0.4377 MGQIYPKQFDVAYTTFVWSPTTLTMTWPIPSRELSVLPLSNKAHYGLYSSATLSWGRSFFSSNKTIDGRGVNVQIKNDDGLTMQYMNNVNIHGICIKKIMPKDDGMIRDSYNHFGLRTRSDGDAISLFGASNIWIDHVSLSNFIDGLIDVIKGSIAVTISNCHMTKHNDVIIAKVFKEVII 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1780g00002 181 Pfam Pectate lyase 60 172 IPR002022 -
Mupr1780g00002 181 PRINTS Pollen allergen Amb family signature 121 142 IPR018082 -
Mupr1780g00002 181 PRINTS Pollen allergen Amb family signature 57 73 IPR018082 -
Mupr1780g00002 181 Gene3D - 44 174 IPR012334 -
Mupr1780g00002 181 PANTHER PECTATE LYASE 18-RELATED 60 172 IPR045032 GO:0030570
Mupr1780g00002 181 SMART amb_all 49 181 IPR002022 -
Mupr1780g00002 181 SUPERFAMILY Pectin lyase-like 59 172 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1780g00002 Mupr-Chr1780 8516 9142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1780g00002 61 181 Polysaccharide Lyase AT1G14420 57.851 6.16e-41 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1780g00002 K01728 - gmx:100785801 178.333