Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1779g00001 ATGTACGGTCCCATGAACCAGATCGTCCCTGCCGAAGACAACGACGCCGCCGCCGCCTCTGACCACCACATTCATTACAATTCTCACGCCGTCGAAGACGCCACCGGCGCCGTTGAAGACGTTTCCGCTGACTCCGTCTACGTTTCGCCCCCTGACATCACTATCCAAGACTCTAGCCAGCTCACGCTCTCGTTTCGCGGCCAAGTCTATGTCTTTGATGCCGTTCAAGCAGTGTTGTTACTGTTGGGAGGAAGTGAACTAACTTCGGGTTCGCAATGTGCCGAGATATCGCCTCAAAATCAGGGGGGTGCGGTGGAATATCCTGCAAGATGTAGTCTACCACAGCGAGCAGCGGCATTAAGTAGGTTCCGTCAGAAGAGGAAAGACCGGTGCTTTGATAAGAAAGTTAGATATGGTGTGCGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGGCAGGATGCTGTTCAATCAGAAACCTCGTGCACACATTGTGGAATAAGTTCAAAATCCACTCCAATGATGCGAAGGGGGCCATCTGGCCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGGGATCTTTCCAAGAGAAACCAGGACCACTCTCTTGCACCACCTGAGCAGGCATGTTATCTTTCACTCCGTATGGTTGACGAGGGTAGTAATAATGACTTGGACTGTCGAAGTGCTATCCCTGAACAACACAACAATCATGTTAATGATAACACAGCTTTGGTATCTGATCGTTGA 840 0.4905 MYGPMNQIVPAEDNDAAAASDHHIHYNSHAVEDATGAVEDVSADSVYVSPPDITIQDSSQLTLSFRGQVYVFDAVQAVLLLLGGSELTSGSQCAEISPQNQGGAVEYPARCSLPQRAAALSRFRQKRKDRCFDKKVRYGVRQEVALRMHRNKGQFTSSKKQDGTNSWGSDQESGQDAVQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDHSLAPPEQACYLSLRMVDEGSNNDLDCRSAIPEQHNNHVNDNTALVSDR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1779g00001 279 ProSitePatterns GATA-type zinc finger domain. 184 211 IPR000679 GO:0006355|GO:0043565
Mupr1779g00001 279 ProSiteProfiles CCT domain profile. 116 158 IPR010402 GO:0005515
Mupr1779g00001 279 SMART GATA_3 178 231 IPR000679 GO:0006355|GO:0043565
Mupr1779g00001 279 Pfam GATA zinc finger 184 220 IPR000679 GO:0006355|GO:0043565
Mupr1779g00001 279 MobiDBLite consensus disorder prediction 150 177 - -
Mupr1779g00001 279 Gene3D - 175 233 IPR013088 GO:0006355|GO:0008270
Mupr1779g00001 279 PANTHER GATA TRANSCRIPTION FACTOR 28 20 254 IPR045280 GO:0006355
Mupr1779g00001 279 Pfam CCT motif 116 158 IPR010402 GO:0005515
Mupr1779g00001 279 SMART tify_2 54 84 IPR010399 -
Mupr1779g00001 279 ProSiteProfiles GATA-type zinc finger domain profile. 178 236 IPR000679 GO:0006355|GO:0043565
Mupr1779g00001 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 178 229 - -
Mupr1779g00001 279 MobiDBLite consensus disorder prediction 157 177 - -
Mupr1779g00001 279 CDD ZnF_GATA 183 230 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1779g00001 Mupr-Chr1779 2640 6975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1779g00001 1 278 Tify Gene Family AT4G24470 50.784 2.17e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mupr1779g00001 CCT 6.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1779g00001 - - pvu:PHAVU_009G035400g 448.743