Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17675g00001 ATGGGGAGGGGAAAAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAGGTAACGTTCTCAAAGAGAAGGTCCGGTTTGCTCAAGAAAGCCCGCGAGATCTCCGTGCTTTGCGATGCTGACGTTGCTCTCATAGTCTTCTCCACCAAGGGCAAGCTTTCCGAGTTCTCCACCCAACCTTCTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCGTATGCGGAGAGGCAGCTTGTTGCAAATGATCAAGAATCAAATGAAAACTGGGTTATAGAACACGAAAAGCTCAAGGCTAGAATGGAAGTACTACAGCCAAATCAAAGGAATTTTATGGGAGAAGAGCTGGATAGCTTAAATCTCAAAGGACTTCAGAATTTGGAACAACAACTTGATTCCGCTCTCAAACACATTAGATCACGAAAGGTAAAACTATGCAACCTAGTGTCTTGGATATGTAATTAA 468 0.4316 MGRGKVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLSEFSTQPSMERILERYERYSYAERQLVANDQESNENWVIEHEKLKARMEVLQPNQRNFMGEELDSLNLKGLQNLEQQLDSALKHIRSRKVKLCNLVSWICN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17675g00001 155 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr17675g00001 155 Coils Coil 125 145 - -
Mupr17675g00001 155 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Mupr17675g00001 155 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Mupr17675g00001 155 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr17675g00001 155 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mupr17675g00001 155 ProSiteProfiles K-box domain profile. 88 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr17675g00001 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr17675g00001 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr17675g00001 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr17675g00001 155 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mupr17675g00001 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr17675g00001 155 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 142 - -
Mupr17675g00001 155 Pfam K-box region 83 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr17675g00001 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17675g00001 Mupr-Chr17675 1598 5885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17675g00001 1 148 MADS-box Gene Family AT1G26310 70.000 6.44e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr17675g00001 K-box 4.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17675g00001 K09264 K09260 gmx:100798351 251.521