Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17642g00004 ATGGCTCCTGCCACCCCATCCCCCTCGGCTCAGAGGCTCGTCGGCTTCAGCCGGCGCACGCAGGCGCCGCGGCGCCCGCACGACGCGCGTCCGGTGAAGAAGTACCGGCTGCTGTCGGAGATAATGGCGCGGGCGCCGTACGCGGTTGCTGAGAGGGAAAGCTACAGCGACCTCACATGCGAGCAATGCGGCTCCGGCGAGCTGCCGGAGGAGCTGCTTCTGTGCGACAAATGCGACGGAGGCTTCCACATGAAATGCGTGAGGCCAATCGTCGTCAGGATTCCGATTGGATCGTGGCTTTGCCCTAAGTGTCAGGGAGGGAAGCGAGTGCGGCCTTTCTCTCAGAAGAAGATAATTGATTTCTTCGGGATTCGGAGGAGTTCTGCTGATGCTAATGACAAACGTTCTTCTCGGGATGCTAAGAAGCGTCGGAAACGTTCGGGACCTCTGGTATTGCATAAGAAAAAGAGGAGATTGTTACCATTTGTTCCTACAAAAGATCCTGCCCAGAGATTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTAAATATGGAATTCAGTGATCATCTCACATACATGCCTGGAATGGCTCCTAGCTCTGCGAATCAAGCCACACTAGAAAATGGTGGCATGCAGGTTCTTACCAAGGAAGATATGGAGACCGTAGAACTATGCAATGCTATGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGGTACCCATCTTGAACTCATCACCACGAAGTCGGAAATCAACTTAATCTATACTGTTGAAGCTGATGACCCAATCAAGGATATGACAATTATTGCTGAATACACTGGCGATGTGGATTACCTTGACAACCGGCAACGTGATGATTGTGACAGTATGATGACCCTTCTTCTTGCAGCAGAAAGTTGTGACAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTTATCAGTGGCATCAACAATCATACACTGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTATTGGTTGCTACTCGTGATATTTCTAAGGGGGAGAGGCTTTATTATGATTATAATGGTTATGAGTATCAATACCCGACTCATCATTTTGTTTGA 1143 0.4864 MAPATPSPSAQRLVGFSRRTQAPRRPHDARPVKKYRLLSEIMARAPYAVAERESYSDLTCEQCGSGELPEELLLCDKCDGGFHMKCVRPIVVRIPIGSWLCPKCQGGKRVRPFSQKKIIDFFGIRRSSADANDKRSSRDAKKRRKRSGPLVLHKKKRRLLPFVPTKDPAQRLKQMGSLASALTALNMEFSDHLTYMPGMAPSSANQATLENGGMQVLTKEDMETVELCNAMSKRGEFPPFMGTHLELITTKSEINLIYTVEADDPIKDMTIIAEYTGDVDYLDNRQRDDCDSMMTLLLAAESCDSLVICADKRGNIARFISGINNHTLEGRKKQNCKCVRYNVNGECRVLLVATRDISKGERLYYDYNGYEYQYPTHHFV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17642g00004 380 SUPERFAMILY SET domain 258 369 IPR046341 -
Mupr17642g00004 380 CDD SET_ATXR5_6-like 235 380 - -
Mupr17642g00004 380 FunFam Histone-lysine N-methyltransferase ATXR5 143 380 - -
Mupr17642g00004 380 SUPERFAMILY FYVE/PHD zinc finger 47 111 IPR011011 -
Mupr17642g00004 380 MobiDBLite consensus disorder prediction 1 29 - -
Mupr17642g00004 380 CDD PHD_RSF1 60 104 - -
Mupr17642g00004 380 Pfam SET domain 293 368 IPR001214 GO:0005515
Mupr17642g00004 380 ProSiteProfiles SET domain profile. 243 368 IPR001214 GO:0005515
Mupr17642g00004 380 Pfam PHD-finger 60 105 IPR019787 -
Mupr17642g00004 380 MobiDBLite consensus disorder prediction 130 150 - -
Mupr17642g00004 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 117 IPR013083 -
Mupr17642g00004 380 ProSiteProfiles Zinc finger PHD-type profile. 57 107 IPR019787 -
Mupr17642g00004 380 ProSitePatterns Zinc finger PHD-type signature. 60 104 IPR019786 -
Mupr17642g00004 380 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 134 378 - -
Mupr17642g00004 380 Gene3D SET domain 143 380 IPR046341 -
Mupr17642g00004 380 SMART PHD_3 59 105 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17642g00004 Mupr-Chr17642 9715 13278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17642g00004 31 142 C2H2 Transcription Factor Family AT3G01460 33.051 2.14e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr17642g00004 SET 2.1e-05 No_clan