Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17596g00001 ATGCTGTCTCAAAAGCTACAAAAGACCCCAACATGCTTTTGGTTTGGTAGTAGAGGAAGAAATCATGTTGACTCACGCTCTATCTGCTTCAACGTTACAACCACTCTGAACAAACCAAAAAAAGCACACTTCTCTCTCTTTCTCTCTCTTTCACTGTTCACTCTGCTGTGTGCCAAAACCAAAACCACTCACAAAGGTGCCACCCCATCTGTCAGCATCTGCGACTTCAATTCGGTTGTACTTATGGAATCTTGGAGTTATGTCCCTGAGGAGAAAGGGTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAGTAGAAAAGCATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGGGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAATTTGTGGACTTGGGATTCCCTGACTTGTTGCAAAAGTCTTTTCATGGTAACCAGCCTCTAGAAACATCTAGCTATGAACTAGATAGTAATAATTCTAGTAAACGAGGGAATTCCTCCACACATGTCATTGCTTTGGATTCTTCTCTAGGGGAAGAAGAATCTGATTCAAAGCATTTAAGTTCTCTAGTTGAATCGAAGACTCAAGATTCTTTGCTGATTGATCTGAAGCTAGGGAGAATAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTGCCAAAGAAGAGTTCACTTTAACGTCTATACATCCGACCATGCTTTCAAAGAGAGCTCGCACTTCCAGTTTATCTCCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACAGCTAAAGTTATTGTAAATGGCATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGATTCCATTTGCTAGCTGAGTTCGATGATGGTAAGCGCAGTTGTCGTAGGCGTCTAGCAGGACATAATGAACGCCGAAGGAAACCTCAATTTGATTACATGACTGGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACCAAGTATCTGGGATCTTCATTACAGAACAAACCCCAGTTTCCCTTTCAAGACATATTTCAAAGCGGCATCCTTTTCCCGGAAAAGCATGCTCAAATCTCTCAGAATGGACGCGTCAAACTGGAAGAGGACTCAATTTATAGTTCCCAACTTGCTGCACCTGCCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGACCAGTCACAGTATCAATCTCGCCACGCAGCAGGAAATCCATTGGCCAGTCCCCGAAACTTTCATGGCATCCACATGGCCGATGGAGATGATGGAGTCTCCAAAACGCCTTTGAGGATAAGCTCGGCAGATAACTATGCACCAAATGAGTCCTTTCCATGTAATGCAGCCTCCATCAAGAATAGATCTGCTCCATTTTCTAACGCCGGCCATGCCCTTCATGGAGATGGTATTTGCCAGCCACCAGAGTTGTTGGAGGTCAAACATCGGCTTTCCTCAGAGCATGGAGGCACCACCGTTGATCTTTTCCAGTTGTCCTCACATCTCCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGAGTACTGTTTCCCAACT 1665 0.4312 MLSQKLQKTPTCFWFGSRGRNHVDSRSICFNVTTTLNKPKKAHFSLFLSLSLFTLLCAKTKTTHKGATPSVSICDFNSVVLMESWSYVPEEKGYLFSDEMDFSLDAFMRSRKALVEWDNKSNFERDGFNSDREVVKSMEFVDLGFPDLLQKSFHGNQPLETSSYELDSNNSSKRGNSSTHVIALDSSLGEEESDSKHLSSLVESKTQDSLLIDLKLGRIADCKGASSDKVAKEEFTLTSIHPTMLSKRARTSSLSPQAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGSSLQNKPQFPFQDIFQSGILFPEKHAQISQNGRVKLEEDSIYSSQLAAPATLGQELSSCALSLLSDQSQYQSRHAAGNPLASPRNFHGIHMADGDDGVSKTPLRISSADNYAPNESFPCNAASIKNRSAPFSNAGHALHGDGICQPPELLEVKHRLSSEHGGTTVDLFQLSSHLQRVEQQRNSVLVKWENEEYCFPT 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17596g00001 555 MobiDBLite consensus disorder prediction 160 179 - -
Mupr17596g00001 555 Pfam SBP domain 261 334 IPR004333 GO:0003677
Mupr17596g00001 555 Gene3D - 252 322 IPR036893 GO:0003677|GO:0005634
Mupr17596g00001 555 SUPERFAMILY SBT domain 259 340 IPR036893 GO:0003677|GO:0005634
Mupr17596g00001 555 FunFam Squamosa promoter-binding-like protein 14 252 322 - -
Mupr17596g00001 555 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 169 540 IPR044817 GO:0003677
Mupr17596g00001 555 ProSiteProfiles Zinc finger SBP-type profile. 258 335 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17596g00001 Mupr-Chr17596 3988 9110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17596g00001 175 554 SBP-box Gene Family AT1G69170 38.592 1.02e-63 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mupr17596g00001 SBP 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17596g00001 - - vum:124825483 910.983