Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17587g00001 ATGGGTGCCCAACAGCCACAGCTTCAGCTTCAGCCTGCACCCTCTTCCCAGGACGAGGCTGCCAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCCTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCTAGGGATTGTTGGTATTGGACGACTGGCAAGTGCTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAACACAGGCAGCAACGGCTGGTGGACCATCTGCACCCCCATCACAGATTCCAACAGCATCTGCAACACATGTACCTTATAATTCCAGTAAACAAGCTGTTGCTTGCATTTTCTTCCAAAAGGGACATTGCTTAAAAGGTGATAGATGTGCCTTCTTGCATGGACCTTCTATTCCTAACACTGGTAATAAAGTATCTGCTCAGGTTCCAGTGACTAGCCAAGGAGCTGAGAATCCAAGTTTTAAGAAGCCTTTTGGCAGCACAGAGAAGTATATTCAGGAAAGGAAAAATTCCCAAGGAAATGTTGCAAAGTCAGGTGGAGGTCCTGAAGCTAAACCTGCCCCCAAAATTGAAACTGCTCCTCAAAGAAATATGTTTGAATTGGAGAAGAAAGTGCCACTTCCATCTGCAGGATTTAATAATGAGGCTTCTAGATTTAAGACAAGTTCTCCCCCTGTGAGCAATGGCCCTACTGTAGCCCGGTCAAACCGTCTGAATCAAGCTCGTGTGCCAGATGATCATAGTTTCCACAGTGGTAAGGACAGTGATGAGTTTCTCAGAGAATCATCTCCTGGGTTTGATGTTCTTGTAGCCGATGAACTCAGGAATTCTGATTACTACCACGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGGAATTTAGACTCTTTGAATGAATACGATTTAGGACATTCTGGTGATTATAGTTTAGCAGCTGATATTGATCGAGATAGATTTCGTGTGCCCCAAGGTTATGAGTCATATGATCACATGCAGGAGCCATATGTTTGGGAGCAGCATAGAAAGGCTCCAGCTCATTTAGACCGAAGGACTCGCCGCAGATCTGACAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCATTTATCCAAGCGCAGGAAGGGAGTCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGCCATGGCGAGGAACAAAGTCATCGGTCCTTCTCTCGGAAGGATCCACTCCAGTTATCTCTGAATGAGAGCTCCCTTGGTAACCGCTTCCGAGGTAGAATTAAACTTCCAGCAAATGGTGGTGGTGATCACCTAGAGAGGGATGACAGAGGAAGAATTAGGAGCAGATTGTCATCTGGAAGTTTGCCAGCCACTCACTCAGGAAGAATTCATGACAGAATGAGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCCAAGGAACGATTGAGGGGGAGAGAACTAATGGGTGATGCCAGTGATTTTGCTGGGCCAAAAAGTCTTGCTGAACTGAAAACTGGGAGGAACACTGAGAGTAGGGAGCAACAACCACTGGGAAGGAGAAGAAGTTTAAGGGATCACCTACAATCGGAAGATGATTTTCAGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAGAGGCACTGGAGCTGGAGCTGATGACAGGAATGGCAAATCATCAGACAATAAGAATGAAGAAGTTACCTATGGCTCAGATCCTATGCCTGTAGCAAACACACAAAACGGAGTGCTGTCTGAGGCCAAGGAAGAAGTCAAGAATGATCTGCTAAATAATGAAGATGAATCCAAGCTTCAGGTCACTGATGCAGCTGGAGGAGACATTAATGCAACTCATGGTCAATCATACGAGGAGGGAGTGCTGTACGATGAAGCTGCGGAGGATCAGTATTATGAAGGGGATGATCAGAGAGATGGTGACTATGAGTATGAACAAGGTGATGAGGGATACTATGAGGAGTATGAACAAGGTGATGAGGGTGAAAATCAGGAGCAAGATTACATGGATGAAGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTGGTTCATTCTTCGGAAAACATCCTCAAGATTAGGATTGTTTCTACTAACAAGTACTCATTGTTGATTAAGATGATTTCTATTGATGCTCCTAAGATGGCCATGATACGATAA 2217 0.4475 MGAQQPQLQLQPAPSSQDEAAKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWTTGKCLNPKCSFRHPPLDGLLTQAATAGGPSAPPSQIPTASATHVPYNSSKQAVACIFFQKGHCLKGDRCAFLHGPSIPNTGNKVSAQVPVTSQGAENPSFKKPFGSTEKYIQERKNSQGNVAKSGGGPEAKPAPKIETAPQRNMFELEKKVPLPSAGFNNEASRFKTSSPPVSNGPTVARSNRLNQARVPDDHSFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDSLNEYDLGHSGDYSLAADIDRDRFRVPQGYESYDHMQEPYVWEQHRKAPAHLDRRTRRRSDSPENAEVSDLRHHLSKRRKGVNGLKSVVSHDYALEGHGEEQSHRSFSRKDPLQLSLNESSLGNRFRGRIKLPANGGGDHLERDDRGRIRSRLSSGSLPATHSGRIHDRMRGRLQDDERRNSKERLRGRELMGDASDFAGPKSLAELKTGRNTESREQQPLGRRRSLRDHLQSEDDFQFEGPKPLSEILKEKRGTGAGADDRNGKSSDNKNEEVTYGSDPMPVANTQNGVLSEAKEEVKNDLLNNEDESKLQVTDAAGGDINATHGQSYEEGVLYDEAAEDQYYEGDDQRDGDYEYEQGDEGYYEEYEQGDEGENQEQDYMDEEEDGDDFAKKIGVVHSSENILKIRIVSTNKYSLLIKMISIDAPKMAMIR 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 647 692 - -
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 515 575 - -
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 222 243 - -
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 576 592 - -
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 470 498 - -
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 356 380 - -
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 85 104 - -
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 356 390 - -
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 179 204 - -
Mupr17587g00001 738 SUPERFAMILY CCCH zinc finger 112 136 IPR036855 GO:0046872
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 442 457 - -
Mupr17587g00001 738 Gene3D - 13 78 - -
Mupr17587g00001 738 SMART c3hfinal6 111 137 IPR000571 GO:0046872
Mupr17587g00001 738 SMART c3hfinal6 54 77 IPR000571 GO:0046872
Mupr17587g00001 738 SMART c3hfinal6 22 49 IPR000571 GO:0046872
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 434 592 - -
Mupr17587g00001 738 ProSiteProfiles Zinc finger C3H1-type profile. 111 138 IPR000571 GO:0046872
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 89 104 - -
Mupr17587g00001 738 Gene3D - 108 182 - -
Mupr17587g00001 738 ProSiteProfiles Zinc finger C3H1-type profile. 21 50 IPR000571 GO:0046872
Mupr17587g00001 738 MobiDBLite consensus disorder prediction 218 243 - -
Mupr17587g00001 738 ProSiteProfiles Zinc finger C3H1-type profile. 52 78 IPR000571 GO:0046872
Mupr17587g00001 738 FunFam Zinc finger CCCH domain-containing protein 17 15 78 - -
Mupr17587g00001 738 Pfam Zinc-finger containing family 22 77 IPR041686 -
Mupr17587g00001 738 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 18 704 - -
Mupr17587g00001 738 Pfam RNA-binding, Nab2-type zinc finger 116 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17587g00001 Mupr-Chr17587 238 4327 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr17587g00001 zf-CCCH_3 2e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17587g00001 - - gmx:100787836 1113.21