LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr17560g00001	ATGTTTCTAAGGTTGAAGTCATGGGTTCCATCCTCGGTGGTGAAGAAGGTATCGAGGGAAGAGGATTGGGAAGATTTGAGGAATACGGAACTTCAACGTGCGAGGTCCAAGAGAATGAAGAGCCGCAACCTCATCTACAAAAGAGCCAGGCAGTATGCAATGGAGTACGCTGAGCAGGAAAAGGAATTGATTCGGTTGAAACGTGAGGCTAAGCTGAAAGGTGGATTTTATGTGGATCCAGAGGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATTAATGCTATGCACCCCAAGACAAGGAAGATCCTGCAGCTGTTGAGATTGAGACAGATATTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAATGAACATGCTTCACAGAGTTGAGCCTTATGTGACATATGGGTATATACCCAAATCTGAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGCACTGGGCAAGTATGAAATCATATCCACTGAAGATCTTATCCATGAGATCATAACTGTTGGACCTCACTTCAAGGAGGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTAAAGAAAAAGAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAACAGGGAGAATTATATCAATGAGCTAATCAGGAGAATGAATTGA	678	0.4277	MFLRLKSWVPSSVVKKVSREEDWEDLRNTELQRARSKRMKSRNLIYKRARQYAMEYAEQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYIPKSEECERTYLQERALGKYEIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN	225

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr17560g00001	225	ProSitePatterns	Ribosomal protein L30 signature.	103	135	IPR018038	-
	Mupr17560g00001	225	Pfam	Ribosomal protein L30p/L7e	85	135	IPR016082	-
	Mupr17560g00001	225	Coils	Coil	49	69	-	-
	Mupr17560g00001	225	SUPERFAMILY	Ribosomal protein L30p/L7e	84	225	IPR036919	-
	Mupr17560g00001	225	CDD	Ribosomal_L7_archeal_euk	84	225	IPR035808	-
	Mupr17560g00001	225	Gene3D	-	84	225	IPR036919	-
	Mupr17560g00001	225	Pfam	Ribosomal L30 N-terminal domain	9	80	IPR012988	-
	Mupr17560g00001	225	PANTHER	60S RIBOSOMAL PROTEIN L7	9	225	IPR039699	-
	Mupr17560g00001	225	FunFam	60S ribosomal protein L7	173	225	-	-
	Mupr17560g00001	225	FunFam	60S ribosomal protein L7	84	172	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr17560g00001	Mupr-Chr17560	7505	9320	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr17560g00001	6	225	Cytoplasmic Ribosomal Protein Gene Family	AT2G44120	68.908	6.36e-114	324

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr17560g00001	K02937		-	gmx:100813342	319.701

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