Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17549g00002 ATGGTTTCCCCGGAAAACAGCAATTGGCTCTTCGATTACCCGTTGATCGACGATATTCCCGTCGCCGACGGCTCCTTCACCGTCTCCGCCTCCGCCTTCTCCTGGCCGCCACCTCCCTCCAATTTCCGAAGTCGTTCGCCTTTGCTAACTTCTCTTTTCGTGATACTATCTGATTCTAGCGTTGAAATTGATGCTTCGCTGGCGGATTCTCATGCTCTCAATGATTCTGCTCTCAAGAAGAGGGGTAGATCTGATTCATGTACTGCTTCTAGCTCTAAGGCGTGTAGGGAGAAGTTGCGGAGGGATAAGCTTAATGACAAGTTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTCTGATTGATGCTGTCCGAATGGTGACACAGCTGCGGGATGAAGCCCAGAAGTTGAAAGACACAAATACCAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGACAGAGAAAGAGAAGTTGGAGCTGCAGGTAAAGTCAATGAATGCCCAACCTGCTTTCTTGCCACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGCAACAAGTTGGTGCCTTTTATCAGTTACCCGGGAGTTGCCATGTGGCAATTTATGCCTCCGGCAGCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCTTAA 750 0.4987 MVSPENSNWLFDYPLIDDIPVADGSFTVSASAFSWPPPPSNFRSRSPLLTSLFVILSDSSVEIDASLADSHALNDSALKKRGRSDSCTASSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRDEAQKLKDTNTSLQEKIKELKAEKNELRDEKQRLKTEKEKLELQVKSMNAQPAFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17549g00002 249 Pfam Helix-loop-helix DNA-binding domain 92 139 IPR011598 GO:0046983
Mupr17549g00002 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 139 IPR011598 GO:0046983
Mupr17549g00002 249 CDD bHLH_AtILR3_like 93 168 - -
Mupr17549g00002 249 Gene3D - 79 137 IPR036638 GO:0046983
Mupr17549g00002 249 Coils Coil 129 191 - -
Mupr17549g00002 249 FunFam Transcription factor bHLH104 91 172 - -
Mupr17549g00002 249 PANTHER BHLH TRANSCRIPTION FACTOR 4 249 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Mupr17549g00002 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 164 IPR036638 GO:0046983
Mupr17549g00002 249 SMART finulus 94 145 IPR011598 GO:0046983
Mupr17549g00002 249 CDD bZIP 154 186 - -
Mupr17549g00002 249 Gene3D arf6 gtpase in complex with a specific effector, jip4 138 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17549g00002 Mupr-Chr17549 4831 6728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17549g00002 1 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.651 6.40e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr17549g00002 HLH 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17549g00002 - - ccaj:109815088 361.303